View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_108 (Length: 295)
Name: NF3772_low_108
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_108 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 38739151 - 38739444
Alignment:
| Q |
1 |
aaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttct |
100 |
Q |
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| T |
38739151 |
aaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagataagaaaattcccaagcggttatatttaacttttct |
38739250 |
T |
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| Q |
101 |
gttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacga |
200 |
Q |
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| T |
38739251 |
gttatttaaaaaatttacaagtgggatgagtaggacaaaaaaaa-tcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcgcga |
38739349 |
T |
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| Q |
201 |
caagtttatcgtgcgatatagcacttctctagtccaatattgtagtatacatatttagattggtgtgagagttgaatatagttacaaaaaaggaa |
295 |
Q |
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| T |
38739350 |
taagtttatcgtgcgatatagcacttctctagtccaatattgtagtatacatatttagattggtgtgagagctgaatatagttacaaaaaaggaa |
38739444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 38151695 - 38151918
Alignment:
| Q |
4 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttctgtt |
103 |
Q |
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| T |
38151695 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttata-ttaacttttctgtt |
38151793 |
T |
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| Q |
104 |
atttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacgacaa |
203 |
Q |
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| T |
38151794 |
atttaaaaaatttacaagtgggatgagtaggac-aaaataaatcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcgcgacaa |
38151892 |
T |
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| Q |
204 |
gtttatcgtgcgatatagcacttctc |
229 |
Q |
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| T |
38151893 |
gtttatcgtgcgatatagcacttctc |
38151918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29059474 - 29059701
Alignment:
| Q |
1 |
aaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttct |
100 |
Q |
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| T |
29059474 |
aaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttatatttaacttttct |
29059573 |
T |
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| Q |
101 |
gttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacga |
200 |
Q |
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| T |
29059574 |
gttatttaaaaaatttacaagtgggaagagtaggac-aaaaaaaatcacaagagctcgtaggataaaaaaattacaagtattttcgttgaatttgcgcga |
29059672 |
T |
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| Q |
201 |
caagtttatcgtgcgatatagcacttctc |
229 |
Q |
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| T |
29059673 |
caagtttatcgtgcgatatagcacttctc |
29059701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8624 - 8851
Alignment:
| Q |
1 |
aaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8624 |
aaggaatagaatgaagggtccttattatgatcaactagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttatatttaacttttct |
8723 |
T |
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| Q |
101 |
gttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacga |
200 |
Q |
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| T |
8724 |
gttatttaaaaaatttacaagtgggaagagtaggac-aaaaaaaatcacaagagctcgtaggataaaaaatttacaagtattttcgttgaatttgcgcga |
8822 |
T |
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| Q |
201 |
caagtttatcgtgcgatatagcacttctc |
229 |
Q |
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| T |
8823 |
caagtttatcgtgcgatatagcatttctc |
8851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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