View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_11 (Length: 606)
Name: NF3772_low_11
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Complemental strand, 43211903 - 43211327
Alignment:
| Q |
17 |
tattatctactattccaagatgtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgtccttttatggatccgtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211903 |
tattatctactattccaagatgtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgtccttttatggatccgtg |
43211804 |
T |
|
| Q |
117 |
atctcattccttattttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagcctt |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43211803 |
acctcattccttattttgcacagggaacgattgttcttgtttttcaaccagcagaagaaggaggtgccggggctaagaaaattttagatgctggagcctt |
43211704 |
T |
|
| Q |
217 |
agaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaggtggcatctaggtcaggtcctatgcttgcaggaggtggcttc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211703 |
agaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttc |
43211604 |
T |
|
| Q |
317 |
tttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211603 |
tttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaac |
43211504 |
T |
|
| Q |
417 |
atattgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttgaggaaannnnnnnnggaaaccatagtgcaacatt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
43211503 |
atattgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttgaggaaaaaaatgttggaaaccgtagtgcaacatt |
43211404 |
T |
|
| Q |
517 |
gtttatttacaacgatttttgaatatgacgaaaacatgaggtttgaatgtcttcctaacctaatatcctcacaggtt |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
43211403 |
gtttatttacaacgatttttgaatatgacgaaaacataagatctgaatgtcttcctaacctaatatcctcacaggtt |
43211327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 99 - 593
Target Start/End: Original strand, 41657605 - 41658100
Alignment:
| Q |
99 |
tccttttatggatccgtgatctcattccttatttt--gcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaa |
196 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | | ||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
41657605 |
tccttttatggatctgtgatatcattccttatttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtggaggggccaagaaa |
41657704 |
T |
|
| Q |
197 |
attttagattctggagccttagaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaggtggcatctaggtcaggtccta |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41657705 |
attttagattctggagccttagaaaatgtttctgccatatttggattgcatatcggacctaacatacctttaggtgaagtggcatctaggtcaggtccta |
41657804 |
T |
|
| Q |
297 |
tgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657805 |
tgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaa |
41657904 |
T |
|
| Q |
397 |
tgtgattgttagcttacaacatattgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttgaggaaannnnnnnn |
496 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41657905 |
tgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgacacccaggtaaaaacttgcaactcatcattgtttgaggaaa-aaatgtt |
41658003 |
T |
|
| Q |
497 |
ggaaaccatagtgcaacattgtttatttacaacgatttttgaatatgacgaaaacatgaggtttgaatgtcttcctaacctaatatcctcacaggtt |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
41658004 |
ggaaaccatagtgcaacattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaacataatatcctcacaggtt |
41658100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 120 - 482
Target Start/End: Original strand, 41651616 - 41651978
Alignment:
| Q |
120 |
tcattccttattttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagccttaga |
219 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41651616 |
tcattccttattttgtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtgccggggctaagaaaattttagatgctggagccttaga |
41651715 |
T |
|
| Q |
220 |
aaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaggtggcatctaggtcaggtcctatgcttgcaggaggtggcttcttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||| |||||||| |||||||| ||||||| | || |||||| |
|
|
| T |
41651716 |
aaatgtctctgccatatttggattgcatgtcctaaataacttacctttaggtgaagtggcttctaggtctggtcctattgctgcaggaagcggtttcttt |
41651815 |
T |
|
| Q |
320 |
aaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacata |
419 |
Q |
| |
|
||||||||||||| |||| ||| || |||| ||||| |||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
41651816 |
gaagcagtaataagcggcatggggggtcatggagccattcctcaccatgctatcgaccccattttggcggcttccaatgtagttgttagcttacaacaaa |
41651915 |
T |
|
| Q |
420 |
ttgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttg |
482 |
Q |
| |
|
||||||| ||||||| ||||||| | || ||||||||||| ||| |||||||| |||||||| |
|
|
| T |
41651916 |
ttgtttctcgcgaggttgatcccgtagactcccaggtaaaagtttacaactcatgattgtttg |
41651978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 99 - 482
Target Start/End: Complemental strand, 43226506 - 43226123
Alignment:
| Q |
99 |
tccttttatggatccgtgatctcattccttattttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaat |
198 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
43226506 |
tccttttatggatccatgatatcattccttattttgtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtgctggggctaagcaaat |
43226407 |
T |
|
| Q |
199 |
tttagattctggagccttagaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaggtggcatctaggtcaggtcctatg |
298 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
43226406 |
tttagacactggagccttagaaaatgtctctgccatatttggattgcatgtcctaagtaacttacctttaggtgaagtggcatcgaggtctggtcctatg |
43226307 |
T |
|
| Q |
299 |
cttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatg |
398 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| |||| ||| || |||| ||||| |||||| |||||||| |||||||||||||| ||||| |||| |
|
|
| T |
43226306 |
gctgcaggatgtggtttctttgaagcagtaataagcggcatggggggtcatggagccattcctcaccatgctatcgaccccattttggctgcttccaatg |
43226207 |
T |
|
| Q |
399 |
tgattgttagcttacaacatattgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttg |
482 |
Q |
| |
|
| |||||||||||||||| || ||||| ||||||| ||||||| | || ||||||||||| || |||||||| |||||||| |
|
|
| T |
43226206 |
tagttgttagcttacaacaaatcgtttctcgcgaggttgatcccgtagactcccaggtaaaagcttacaactcatgattgtttg |
43226123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 98 - 444
Target Start/End: Complemental strand, 43204801 - 43204453
Alignment:
| Q |
98 |
gtccttttatggatccgtgatctcattccttattttgc--acagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaa |
195 |
Q |
| |
|
|||||| |||| ||| ||||| |||||||||||||| | ||||||| || ||||||||||||||||| |||||||||||||||| |||||||| || |
|
|
| T |
43204801 |
gtccttctatgtatctgtgatatcattccttatttttattatagggaacaatagttcttgtttttcaaccagcagaagaaggaggtggtggggctaaaaa |
43204702 |
T |
|
| Q |
196 |
aattttagattctggagccttagaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaggtggcatctaggtcaggtcct |
295 |
Q |
| |
|
|||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||| | |||| ||||| ||||||| ||||| |||||||| |||||| |
|
|
| T |
43204701 |
aattttagatgctggtgccttggaaaaagtctctgccatatttggattgcatgtcctaaataacttacctctaggtgaagtggcttctaggtccggtcct |
43204602 |
T |
|
| Q |
296 |
atgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcga |
395 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||| ||||| || ||||| |||| | |
|
|
| T |
43204601 |
atatttgcaggaaatggcttctttaaagcagtaataagcggcaggggaggccatgcagccattcctcaacattctatagaccctatattggcaacttcca |
43204502 |
T |
|
| Q |
396 |
atgtgattgttagcttacaacatattgtttcacgcgaggctgatcccct |
444 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
43204501 |
atgtgattgttagcttacaacaaattgtttctcgcgagattgatcccct |
43204453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 593
Target Start/End: Original strand, 41652009 - 41652092
Alignment:
| Q |
512 |
acattgtttatttacaacgatttttgaatatgacgaaaacatgaggtttgaatgtcttcctaac--ctaatatcctcacaggtt |
593 |
Q |
| |
|
||||| ||| ||||||| ||||||| |||||||||||||| ||||| | |||| ||||||||| |||||||||| |||||| |
|
|
| T |
41652009 |
acattatttgtttacaatgattttttaatatgacgaaaacctgaggcctaaatgccttcctaacaaataatatcctcgcaggtt |
41652092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 138 - 441
Target Start/End: Complemental strand, 5071529 - 5071226
Alignment:
| Q |
138 |
agggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagccttagaaaatgtctctgccatatt |
237 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| |||||||| | ||||||||||||||||||||| | || || |||||||||||| |||| || || |
|
|
| T |
5071529 |
agggaaccattgttcttgttttccaaccagcagaggaaggaggcggaggggctaagaaaattttagatgccggggcattagaaaatgtcactgctatctt |
5071430 |
T |
|
| Q |
238 |
tggattgcatgtcggacctaacatacctttaggtgaggtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggc |
337 |
Q |
| |
|
|||||||||| | | ||| || |||| | ||||| ||| | || ||||| ||||| || | |||||| |||| |||||| ||||| |||||| || |
|
|
| T |
5071429 |
tggattgcatattgttcctgacttaccaattggtgaagtgtcctccaggtctggtccaatattggcaggaagtggattctttgaagcaaaaataagtgga |
5071330 |
T |
|
| Q |
338 |
aagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatattgtttcacgcgaggctg |
437 |
Q |
| |
|
|||||||| |||||||| | ||||||||| |||| || ||||| || || ||||| || |||| ||||| |||| || ||||||| |||||||||| |
|
|
| T |
5071329 |
aagggaggtcatgcagctattcctcaacaatctatagatcccatattagcagcttctggtgcgattattagcctacagcaccttgtttctcgcgaggctg |
5071230 |
T |
|
| Q |
438 |
atcc |
441 |
Q |
| |
|
|||| |
|
|
| T |
5071229 |
atcc |
5071226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 25928785 - 25928703
Alignment:
| Q |
99 |
tccttttatggatccgtgatctcattccttattttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggt |
181 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
25928785 |
tccttttatggatccatgatatcattccttattttgtacagggaaatgttgttcttgtttttcaaccagccgaagaaggaggt |
25928703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 442
Target Start/End: Complemental strand, 25928589 - 25928402
Alignment:
| Q |
263 |
cctttaggtgaggtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaag--------ggaggccatgcagc |
354 |
Q |
| |
|
||||||||||| | |||| |||||| |||||||| ||||||||| |||| |||||| ||||||||||||| |||| | || || |||| ||| |
|
|
| T |
25928589 |
cctttaggtgacattgcatttaggtctggtcctattcttgcaggaagtggtttctttgaagcagtaataagcggcatgtggtggggggggggcatggagc |
25928490 |
T |
|
| Q |
355 |
caatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatattgtttcacgcgaggctgatccc |
442 |
Q |
| |
|
|| |||||| |||| | | ||||||||||||||||||| ||||| | | ||||||||||||| || ||||| ||||||| ||||||| |
|
|
| T |
25928489 |
cattcctcaccatgttctcaaccccattttggcggcttccaatgtaactattagcttacaacaaatagtttctcgcgaggttgatccc |
25928402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 25928699 - 25928633
Alignment:
| Q |
167 |
gcagaagaaggaggtgccggggctaagaaaattttagattctggagccttagaaaatgtctctgcca |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
25928699 |
gcagaagaaggaggtgttggggctaagaaaattttagaccctggaatcttggaaaatgtctctgcca |
25928633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 9419009 - 9419087
Alignment:
| Q |
147 |
ttgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagccttagaaaatgt |
225 |
Q |
| |
|
||||||||||||| || || ||||| |||||||||| || ||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
9419009 |
ttgttcttgttttccatccagcagacgaaggaggtgtaggagctaagaaaatattagattctagagcgttagaaaatgt |
9419087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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