View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_110 (Length: 293)
Name: NF3772_low_110
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 51935625 - 51935351
Alignment:
| Q |
1 |
tcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatatttta |
100 |
Q |
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| T |
51935625 |
tcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatatttta |
51935526 |
T |
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| Q |
101 |
agccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaannnnnnnacaggtgcatccgaccaacacctgaagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51935525 |
agccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaatttttttacaggtgcatccgaccaacacctgaagag |
51935426 |
T |
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| Q |
201 |
ctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattac |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935425 |
ctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattac |
51935351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 12996152 - 12996053
Alignment:
| Q |
172 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
271 |
Q |
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| T |
12996152 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
12996053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 13070805 - 13070706
Alignment:
| Q |
172 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
271 |
Q |
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| T |
13070805 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
13070706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 275
Target Start/End: Complemental strand, 28138193 - 28138091
Alignment:
| Q |
173 |
caggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcat |
272 |
Q |
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||||||||| ||||| || ||| ||||||| ||| | ||||| || |||||||||||||| || ||||||||| ||| || |||||||||| ||| ||| |
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| T |
28138193 |
caggtgcattcgacctactcctaaagagcttgagaattttggcacaccagatttcactatttataatgcaggaaggtttccatgtaatcgttatacacat |
28138094 |
T |
|
| Q |
273 |
tac |
275 |
Q |
| |
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||| |
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| T |
28138093 |
tac |
28138091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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