View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_111 (Length: 289)
Name: NF3772_low_111
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_111 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 11665761 - 11665498
Alignment:
| Q |
11 |
cataggaagcagacttagccaaatttctaccttcaagaattttacgccactttacctctactcaaaatataaagcaagaaacgatacggg--cagtagac |
108 |
Q |
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| T |
11665761 |
catagcaagcagacttagccaaatttctaccttcaaaaattttacgccactt-acctctactcaaaatataaagcaagaaacgaaacgggggcagtagac |
11665663 |
T |
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| Q |
109 |
caccactatattttacctccttaggactctacaccttaatttcgtcaccccaacataaatatttagtggaataattcttggtcagattttacttaccttt |
208 |
Q |
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| T |
11665662 |
caccactatattttacctccttaggactctacaccttaacttcgtcaccccaacataaatatttagtggaataattcttggtcagattttacttaccttt |
11665563 |
T |
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| Q |
209 |
aagatgaattataaattaccagaaccatgttgagtgcgatttaaaatctcaccatatataaagag |
273 |
Q |
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| T |
11665562 |
aagatgaattataaattatcagaatcatgttgaatgcgacttaaaatctcaccatatataaagag |
11665498 |
T |
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