View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_113 (Length: 286)
Name: NF3772_low_113
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_113 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 52239243 - 52239503
Alignment:
| Q |
12 |
acagacacggggttaagtaaaagcattaatttcttagatatatgattgatgttcgt--tttaattttaaatcaaattcaagaaccgaaaataacacttca |
109 |
Q |
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| T |
52239243 |
acagacacggggttaagtaaaagcattaatttcttagatatatgattgatgttcgtattttaattttaaatcaaattcaagaaccgaaaataacacttca |
52239342 |
T |
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| Q |
110 |
tctaaatacaaggggttgtggatcctctggaaaattcatggagaaaagacaccgaccatctccatctaatctaattatggatccatcacaattcataaat |
209 |
Q |
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| T |
52239343 |
tctaaatacaaggggttgtggatcctctggaaaattcatggagaaaagacaccgaccatctccatctaatctaattatggatccatcacaattcataaat |
52239442 |
T |
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| Q |
210 |
ttaatactccaagagtaggtgtaatagtttgaacgatgatgaaattaaatcgaaatagaag |
270 |
Q |
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| T |
52239443 |
ttaatactccaagagtaggtgtaatagtttgaacgatgatgaaattaaatcgaaatagaag |
52239503 |
T |
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