View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_114 (Length: 285)
Name: NF3772_low_114
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_114 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1538608 - 1538340
Alignment:
| Q |
1 |
tctgaaacatcttttcaacctttgatttctcaagattaagggttttcctctatatgattttcctgcatattatgatattaaacacttttgtttgatttag |
100 |
Q |
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| T |
1538608 |
tctgaaacatcttttcaacctttgatttctcaagattaagggttttcctctatatgattttcctgcatattatgatattaaacacttttgtttgatttag |
1538509 |
T |
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| Q |
101 |
cttatgtaacttttgtgttgctatttttgggttcagcaacttcataaatgatgcagccaagaaaggtagtgattccgaacttctgaatgcgccaaaggat |
200 |
Q |
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| T |
1538508 |
cttatctaacttttgtgttgctatttttgggttcagcaacttcataaatgatgcagccaagaaaggtagtgattccaaacttctgaatgcgccaaaggat |
1538409 |
T |
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| Q |
201 |
ccgaatattcctcatatagatgcggatattgaagatcctcaactatacagcttctatggcttttagagg |
269 |
Q |
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| T |
1538408 |
ccgaatattcctcatatagatgcggatattgaagatcctcaactatacatcttctatggcttttagagg |
1538340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 17768655 - 17768387
Alignment:
| Q |
1 |
tctgaaacatcttttcaacctttgatttctcaagattaagggttttcctctatatgattttcctgcatattatgatattaaacacttttgtttgatttag |
100 |
Q |
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| T |
17768655 |
tctgaaacatcttttcaacctttgatttctcaagattaagggttttcctctatatgattttcctgcatattatgatattaaacacttttgtttgatttag |
17768556 |
T |
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| Q |
101 |
cttatgtaacttttgtgttgctatttttgggttcagcaacttcataaatgatgcagccaagaaaggtagtgattccgaacttctgaatgcgccaaaggat |
200 |
Q |
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| T |
17768555 |
cttatctaacttttgtgttgctatttttgggttcagcaacttcataaatgatgcagccaagaaaggtagtgattccaaacttctgaatgcgccaaaggat |
17768456 |
T |
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| Q |
201 |
ccgaatattcctcatatagatgcggatattgaagatcctcaactatacagcttctatggcttttagagg |
269 |
Q |
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| T |
17768455 |
ccgaatattcctcatatagatgcggatattgaagatcctcaactatacatcttctatggcttttagagg |
17768387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 52 - 258
Target Start/End: Complemental strand, 44178018 - 44177811
Alignment:
| Q |
52 |
atatgattttcctgcatattatgatattaaacacttttgtttgatttagcttatgtaacttttgtgttgctatttttgggttcagcaacttcataaa-tg |
150 |
Q |
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|||||| ||||||||||||| |||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||| ||| || |
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| T |
44178018 |
atatgagtttcctgcatattgtgatatcaaacacttttgtttttattagttgatgtaacttttgtgttgctatttttgggttcagcggcttcacaaactg |
44177919 |
T |
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| Q |
151 |
atgcagccaagaaaggtagtgattccgaacttctgaatgcgccaaaggatccgaatattcctcatatagatgcggatattgaagatcctcaactatacag |
250 |
Q |
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||||||| ||||||| |||||||||| |||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||| |
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| T |
44177918 |
atgcagctaagaaagatagtgattccaaacttctgaatgcgcccaaggatccggatattcctaatatagatgctgatattgaagatcctcaactatgcag |
44177819 |
T |
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| Q |
251 |
cttctatg |
258 |
Q |
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|||||||| |
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| T |
44177818 |
cttctatg |
44177811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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