View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_127 (Length: 270)

Name: NF3772_low_127
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_127
NF3772_low_127
[»] chr7 (2 HSPs)
chr7 (98-261)||(45284986-45285148)
chr7 (1-37)||(45284889-45284925)
[»] chr6 (2 HSPs)
chr6 (192-251)||(6080500-6080559)
chr6 (192-252)||(20429807-20429867)
[»] chr5 (2 HSPs)
chr5 (192-251)||(1289699-1289758)
chr5 (192-251)||(2077643-2077702)
[»] chr3 (3 HSPs)
chr3 (192-251)||(51449875-51449934)
chr3 (194-261)||(9257157-9257224)
chr3 (192-251)||(52137242-52137301)
[»] chr2 (2 HSPs)
chr2 (192-251)||(8178844-8178903)
chr2 (175-253)||(28217968-28218047)
[»] chr1 (1 HSPs)
chr1 (192-251)||(49349583-49349642)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 45284986 - 45285148
Alignment:
Q  98 atggcctccaaatttaaatgagtcttctcttattagctaaatccttacattatagttgatgctaaagaaatttaatatattaggaaattaatcagaagat 197  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284986 atggcctccaa-tttaaacgagtcttctcttattagctaaatccttacattatagttgatgctaaagaaatttaatatattaggaaattaatcagaagat 45285084  T
Q  198 ttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagtattgatgatg 261  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45285085 ttgtttggactgtaaagtcataaatagagagaacttaactaccgaacaaagagtattgatgatg 45285148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45284889 - 45284925
Alignment:
Q  1 aaacttgtcgggtgttatttactatttaaatagatga 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  45284889 aaacttgtcggatgttatttactatttaaatagatga 45284925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 6080500 - 6080559
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagt 251  Q
    |||||||||||| |||||||||||||||  | |||||| ||||||||||||||| |||||    
T  6080500 gaagatttgtttggactgtaaagtcatacctggagagagcttaactacccaacatagagt 6080559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 20429867 - 20429807
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagta 252  Q
    |||||| ||||| |||||||||||||||  | |||||| ||||||||||||||| ||||||    
T  20429867 gaagatctgtttagactgtaaagtcatacctggagagatcttaactacccaacatagagta 20429807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 1289758 - 1289699
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagt 251  Q
    |||||||||||| |||||||||||||||  | |||||| ||||||||||||||| |||||    
T  1289758 gaagatttgtttagactgtaaagtcatacctggagagagcttaactacccaacatagagt 1289699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 2077702 - 2077643
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagt 251  Q
    |||||||||||| |||||||||||||||  | ||| || ||||||||||||||| |||||    
T  2077702 gaagatttgtttggactgtaaagtcatacctggagtgagcttaactacccaacatagagt 2077643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 51449934 - 51449875
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagt 251  Q
    |||||||||||| |||||||||||||||  | |||||| ||||||||||||||| |||||    
T  51449934 gaagatttgtttggactgtaaagtcatacctggagagagcttaactacccaacatagagt 51449875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 9257157 - 9257224
Alignment:
Q  194 agatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagtattgatgatg 261  Q
    |||||||||| || ||||| |||||  || |||||| ||||||||||||||| ||||||||| |||||    
T  9257157 agatttgtttggaatgtaaggtcatgcatggagagagcttaactacccaacatagagtattgctgatg 9257224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 52137242 - 52137301
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagt 251  Q
    |||||||||||| |||||||||| ||||  | |||||| ||||||||||||||| |||||    
T  52137242 gaagatttgtttggactgtaaagacatacctggagagagcttaactacccaacatagagt 52137301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 8178844 - 8178903
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagt 251  Q
    |||||||||||| |||||||||||||||  | ||||||  |||||||||||||| |||||    
T  8178844 gaagatttgtttggactgtaaagtcatacctggagagagtttaactacccaacatagagt 8178903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 28218047 - 28217968
Alignment:
Q  175 tattaggaaattaatc-agaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagtat 253  Q
    ||||||||||| || | ||||||||| ||| |||||||||||||||  | |||||| ||||||||||||| | |||||||    
T  28218047 tattaggaaatcaaacgagaagatttttttggactgtaaagtcatacctggagagagcttaactacccaaaatagagtat 28217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 49349642 - 49349583
Alignment:
Q  192 gaagatttgtttcgactgtaaagtcataaatagagagaacttaactacccaacaaagagt 251  Q
    |||||||||||| |||||||||||||||  | |||||| |||||||| |||||| |||||    
T  49349642 gaagatttgtttggactgtaaagtcatacctggagagagcttaactatccaacatagagt 49349583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University