View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_13 (Length: 599)

Name: NF3772_low_13
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_13
NF3772_low_13
[»] chr6 (3 HSPs)
chr6 (11-584)||(6368408-6368980)
chr6 (406-465)||(5642546-5642605)
chr6 (407-446)||(32312815-32312854)
[»] chr8 (3 HSPs)
chr8 (347-425)||(41146216-41146294)
chr8 (340-421)||(29471776-29471857)
chr8 (407-458)||(41146130-41146181)
[»] chr3 (1 HSPs)
chr3 (352-424)||(48847597-48847669)
[»] chr5 (1 HSPs)
chr5 (367-422)||(12429818-12429873)
[»] chr1 (2 HSPs)
chr1 (407-446)||(9607674-9607713)
chr1 (407-440)||(30192232-30192265)
[»] scaffold0065 (1 HSPs)
scaffold0065 (407-446)||(49577-49616)
[»] chr4 (3 HSPs)
chr4 (347-425)||(41921941-41922019)
chr4 (407-449)||(41922054-41922096)
chr4 (407-443)||(49378892-49378928)
[»] chr2 (1 HSPs)
chr2 (415-445)||(36639113-36639143)
[»] chr7 (1 HSPs)
chr7 (352-421)||(10201437-10201506)


Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 11 - 584
Target Start/End: Original strand, 6368408 - 6368980
Alignment:
Q  11 caaagggtatgtatgtattaaatattttgcatcgtgttgcttcgtattagtatatgagtaaattgtcattttggtccgtaaatgtgtgacgtggt-ctat 109  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  6368408 caaagggtatgtatgtattaaatattttgcatagtgttgcttcgtattagtatatgagtaaattgtcattttggtccgtaaatgtgtgaggtggtgctat 6368507  T
Q  110 tatagtctctaaatgtatcgaaactttgaaaatatctatggatgtgtcttctgctagtaattttaataagcaccaaatagagaaacggaacacatgtttg 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||   |||||| |||||||||||||    
T  6368508 tatagtctctaaatgtatctaaactttgaaaatatctatggatgtgtcttctgctagtaattttaa---gcaccaaacgaagaaactgaacacatgtttg 6368604  T
Q  210 acgacaaaattgacgaacgaaagacacatttagagatgttttataaatttgatgtatttgtagaaactatcgtgacactgcttgacatattcaagaattc 309  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  6368605 acgacaaaattgacgaacgaaagacacatttagtgatgttttataaatttggtgtatttgtagagactatcgtgacactgcttgacatattcaagaattc 6368704  T
Q  310 aaaccaattgaacttaattcttccatatgcttacttggtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcattt 409  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  6368705 aaaccaattgaacttaattcttccatatgcttacttagtgt--gtttggtttcacgtttgcaacacagaaaagcacgtttgcacgcttcccgatgcattt 6368802  T
Q  410 ttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacatgcacttagttacttgtctttgttttctgtgagattttatattttttcaac- 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6368803 ttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacatgcacttagttacttgtctttgttttctgtgagattttatattttttcaaca 6368902  T
Q  509 --aatatgtgccatatgatcttcttttgtcagtatggaactataattgatcatgtgctcaagcttataaggttgttta 584  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368903 ataatatgtgccatatgatcttcttttgtcagtatggaactataattgatcatgtgctcaagcttataaggttgttta 6368980  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 5642605 - 5642546
Alignment:
Q  406 atttttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacatgcactta 465  Q
    ||||||| |||||||||||| |||||||||||| ||||| ||||||| ||||||| ||||    
T  5642605 atttttgtcgtgattttcattaaactccgttttacaaacccaataccaaacatgctctta 5642546  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 446
Target Start/End: Complemental strand, 32312854 - 32312815
Alignment:
Q  407 tttttgccgtgattttcatcaaactccgttttgcaaacgc 446  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  32312854 tttttgccgtgatttccatcaaagtccgttttgcaaacgc 32312815  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 41146294 - 41146216
Alignment:
Q  347 gtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttcat 425  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  41146294 gtgtatgtttggtttcccgtttgcaacacacaaaagcatacttgcacgctttccgatacatttttgccgtgattctcat 41146216  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 29471857 - 29471776
Alignment:
Q  340 ttacttggtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattt 421  Q
    |||||||| || ||||||||||  ||||||||||| | ||||||||| ||||| |||||||||||||||||||  |||||||    
T  29471857 ttacttggcgtgtgtttggttttccgtttgcaacatataaaagcacatttgcatgcttcccgatgcatttttgttgtgattt 29471776  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 41146181 - 41146130
Alignment:
Q  407 tttttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacat 458  Q
    |||||||||||||||  ||||||||||||||||||||| |||| || |||||    
T  41146181 tttttgccgtgatttctatcaaactccgttttgcaaacacaatgccaaacat 41146130  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 48847597 - 48847669
Alignment:
Q  352 tgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttca 424  Q
    ||||||||||  ||||||||||| | |||||||   ||||||| || ||||||||||||||||||||||||||    
T  48847597 tgtttggttttccgtttgcaacatacaaaagcatgtttgcacgttttccgatgcatttttgccgtgattttca 48847669  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 12429873 - 12429818
Alignment:
Q  367 ttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgatttt 422  Q
    |||||||||| ||||||||  |||||||||| || |||||||||||||||||||||    
T  12429873 ttgcaacacataaaagcacgtttgcacgctttccaatgcatttttgccgtgatttt 12429818  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 407 - 446
Target Start/End: Original strand, 9607674 - 9607713
Alignment:
Q  407 tttttgccgtgattttcatcaaactccgttttgcaaacgc 446  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9607674 tttttgccgtgattttcatcaaacaccgttttgcaaacgc 9607713  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 440
Target Start/End: Complemental strand, 30192265 - 30192232
Alignment:
Q  407 tttttgccgtgattttcatcaaactccgttttgc 440  Q
    ||||||||||||||||||||||||||| ||||||    
T  30192265 tttttgccgtgattttcatcaaactccattttgc 30192232  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 446
Target Start/End: Original strand, 49577 - 49616
Alignment:
Q  407 tttttgccgtgattttcatcaaactccgttttgcaaacgc 446  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  49577 tttttgtcgtgattttcattaaactccgttttgcaaacgc 49616  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 41921941 - 41922019
Alignment:
Q  347 gtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttcat 425  Q
    ||||||||||| ||||   ||||||||||| |||| |||  |||||| ||| || ||||||||||||||||||| ||||    
T  41921941 gtgtatgtttgatttcctctttgcaacacacaaaaacacgtttgcacactttccaatgcatttttgccgtgattctcat 41922019  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 41922054 - 41922096
Alignment:
Q  407 tttttgccgtgattttcatcaaactccgttttgcaaacgcaat 449  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  41922054 tttttgccgtgatttctatcaaactccgtttttcaaacgcaat 41922096  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 49378892 - 49378928
Alignment:
Q  407 tttttgccgtgattttcatcaaactccgttttgcaaa 443  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  49378892 tttttaccgtgatttttatcaaactccgttttgcaaa 49378928  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 445
Target Start/End: Original strand, 36639113 - 36639143
Alignment:
Q  415 gtgattttcatcaaactccgttttgcaaacg 445  Q
    |||||||||||||||||||||||||||||||    
T  36639113 gtgattttcatcaaactccgttttgcaaacg 36639143  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 10201506 - 10201437
Alignment:
Q  352 tgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattt 421  Q
    ||||||||||  ||||||||||||| |||| |||  |||||||||| | |||| |||||||| |||||||    
T  10201506 tgtttggttttccgtttgcaacacacaaaatcacgtttgcacgctttctgatgtatttttgctgtgattt 10201437  T

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