View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_130 (Length: 267)

Name: NF3772_low_130
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_130
NF3772_low_130
[»] chr4 (3 HSPs)
chr4 (10-267)||(53328607-53328864)
chr4 (12-262)||(22898448-22898698)
chr4 (12-262)||(22950116-22950366)
[»] chr5 (1 HSPs)
chr5 (12-262)||(26358585-26358835)
[»] chr2 (1 HSPs)
chr2 (12-262)||(41027467-41027717)
[»] chr7 (2 HSPs)
chr7 (12-259)||(39954885-39955132)
chr7 (30-265)||(10575300-10575535)
[»] chr3 (7 HSPs)
chr3 (15-262)||(21584634-21584881)
chr3 (12-259)||(24981941-24982188)
chr3 (63-223)||(24919962-24920122)
chr3 (15-223)||(24923536-24923744)
chr3 (15-259)||(31825597-31825841)
chr3 (15-223)||(24497335-24497543)
chr3 (57-223)||(25084978-25085144)
[»] chr8 (1 HSPs)
chr8 (30-163)||(14261168-14261301)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 53328607 - 53328864
Alignment:
10 gcaaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtct 109  Q
    ||||||||||||||||| | |||||||| ||||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||| |||||||||||    
53328607 gcaaaggaggaaagggtttaggaaagggtggagcgaaacgacaccgtaaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtct 53328706  T
110 cgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
53328707 cgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtc 53328806  T
210 acctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctc 267  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
53328807 acatacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctc 53328864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 22898448 - 22898698
Alignment:
12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| |    
22898448 aaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttg 22898547  T
112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |  |  | || || ||||||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||| | ||||| || ||    
22898548 ctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgac 22898647  T
212 ctacacagagcatgctcgccgtaagactgttactgcaatggatgttgttta 262  Q
     ||||| ||||| ||| |  | ||||| |||||||| |||||||| |||||    
22898648 ttacactgagcacgctagaaggaagacggttactgctatggatgtggttta 22898698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 22950116 - 22950366
Alignment:
12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| |    
22950116 aaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttg 22950215  T
112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |  |  | || || ||||||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||| | ||||| || ||    
22950216 ctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgac 22950315  T
212 ctacacagagcatgctcgccgtaagactgttactgcaatggatgttgttta 262  Q
     ||||| ||||| ||| |  | ||||| |||||||| |||||||| |||||    
22950316 ttacactgagcacgctagaaggaagacggttactgctatggatgtggttta 22950366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 26358835 - 26358585
Alignment:
12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||||||||||||| | |||||||| || ||||| || || || || || ||||| |||||||| || ||||| || || || || ||||||||||| |    
26358835 aaaggaggaaagggtttaggaaagggtggtgcaaagcgtcatcgcaaagttcttcgagataacattcagggaattaccaaacccgcgattcgtcgtcttg 26358736  T
112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |||| ||||||||||| || |||||||||||  | |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
26358735 caaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcac 26358636  T
212 ctacacagagcatgctcgccgtaagactgttactgcaatggatgttgttta 262  Q
     ||||| || |||||||| || || || |||||||| ||||||||||||||    
26358635 ttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgttta 26358585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 41027467 - 41027717
Alignment:
12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| | |    
41027467 aaaggtggaaagggattgggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttgg 41027566  T
112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    || |  | || || ||||||||||| || || || ||||| ||||| || ||||||||  | ||||||||| | |||||||| ||||||||||| || ||    
41027567 cacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttac 41027666  T
212 ctacacagagcatgctcgccgtaagactgttactgcaatggatgttgttta 262  Q
     ||||||||||| ||| |  | |||||||||||||| ||||||||||||||    
41027667 ttacacagagcacgctaggagaaagactgttactgctatggatgttgttta 41027717  T

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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 39955132 - 39954885
Alignment:
12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||||||||||||  | |||||||||||||||||  | ||| | ||||| ||||| || ||||||||||| || || |||||||| ||||||||||| |    
39955132 aaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagcctgcgattcgtcgtcttg 39955033  T
112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |||| ||||||||||||||| | ||||| ||  | ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| || ||    
39955032 caaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttac 39954933  T
212 ctacacagagcatgctcgccgtaagactgttactgcaatggatgttgt 259  Q
     ||||| ||||||||| |  | || |||||||| || |||||||||||    
39954932 ttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 10575300 - 10575535
Alignment:
30 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 129  Q
    |||||||| || |||||  |||| || ||||| || ||||| ||||||||||||||||||||||| || ||||||||  | || ||| | || |||||||    
10575300 ggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtga 10575399  T
130 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcg 229  Q
    |  | |||||||| || |||||||| |||||  | || ||  | ||||||||  | |||||||| ||  | ||||| || || ||||| ||||||||  |    
10575400 aaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgag 10575499  T
230 ccgtaagactgttactgcaatggatgttgtttacgc 265  Q
      | || ||||| ||||| |||||||||||||||||    
10575500 gaggaaaactgtgactgctatggatgttgtttacgc 10575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 21584881 - 21584634
Alignment:
15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||  ||||| | || || |||||||||||||| || |||||||| ||||| || ||||||||  | || |    
21584881 ggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcga 21584782  T
115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttg-agaatgtgattcgtgatgcagtcacct 213  Q
    || | |||||||| ||| | |||||||| || || ||||| |||||  | || ||||| ||||| ||||||| ||||||||||||||||||| || || |    
21584781 gaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagat-tttcttggagaatgtgattcgtgatgcggttacgt 21584683  T
214 acacagagcatgctcgccgtaagactgttactgcaatggatgttgttta 262  Q
    |||| ||||||||  |  | |||||||| ||||| ||||||||||||||    
21584682 acactgagcatgcaaggaggaagactgtgactgctatggatgttgttta 21584634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 24981941 - 24982188
Alignment:
12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    |||||||| ||||| || ||||||||||| |||||  | ||  | || || ||||||||||||||||| || ||||| |||||||| ||||||||  | |    
24981941 aaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattgg 24982040  T
112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    ||||| | |||||||| ||| | |||||||| || || |||||||||||  | || ||  | ||||||||  | |||||||| || ||||||||||| ||    
24982041 caagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttac 24982140  T
212 ctacacagagcatgctcgccgtaagactgttactgcaatggatgttgt 259  Q
     ||||| ||||| ||| |  | ||||||||||| || |||||||||||    
24982141 atacactgagcacgctaggaggaagactgttaccgccatggatgttgt 24982188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 24920122 - 24919962
Alignment:
63 cttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactc 162  Q
    ||||||||||||||||| || ||||| |||||||||||||||||  | |||||| | |||||||||||| | ||||| || || ||||||||||||||      
24920122 cttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaacca 24920023  T
163 gtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 223  Q
    | || ||  | ||||||||  | |||||||| ||||||||||| || || ||||| |||||    
24920022 gaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagca 24919962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 24923744 - 24923536
Alignment:
15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||  | ||  | ||||| ||||||||||||||||| || ||||| |||||||| ||||||||  | ||||    
24923744 ggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaa 24923645  T
115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcaccta 214  Q
    || | |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| ||||||||||| || || ||    
24923644 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacata 24923545  T
215 cacagagca 223  Q
    ||| |||||    
24923544 cactgagca 24923536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 31825841 - 31825597
Alignment:
15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||| | ||| | || || || || || |||||||| || ||||| |||||||| ||||||||  | || |    
31825841 ggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcga 31825742  T
115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcaccta 214  Q
    || | |||||||||||| | |||||||| || ||||||||||||||| | || ||  | ||||||||  | |||||||| || |||||||| ||||| ||    
31825741 gaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacata 31825642  T
215 cacagagcatgctcgccgtaagactgttactgcaatggatgttgt 259  Q
    ||| ||||| ||| |  | ||||| ||||| || |||||||||||    
31825641 cactgagcacgctaggaggaagacagttaccgcgatggatgttgt 31825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 24497543 - 24497335
Alignment:
15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||  | ||  | ||||| |||||||| |||||||| || ||||| |||||||| ||||||||  | ||||    
24497543 ggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaa 24497444  T
115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcaccta 214  Q
    || | |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | || |||||||| ||||||||||| || ||    
24497443 gaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacata 24497344  T
215 cacagagca 223  Q
    ||| |||||    
24497343 cactgagca 24497335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 25084978 - 25085144
Alignment:
57 aaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag 156  Q
    ||||| ||||||||||||||||| || ||||| |||||||| |||||| |  | || ||| | |||||||||||| | |||||||| || || |||||||    
25084978 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaag 25085077  T
157 aaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 223  Q
    ||||  | || ||  | ||||||||  | ||||||||||| ||||||||||| || ||||| |||||    
25085078 aaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagca 25085144  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 14261301 - 14261168
Alignment:
30 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 129  Q
    ||||||||||| |||||  |||| || || ||||||||||| ||||||||||||||||||||||| || ||||| ||  | || ||| | || |||||||    
14261301 ggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtga 14261202  T
130 agcgtatcagtggcttaatctatgaagaaactcg 163  Q
    || | ||||| || || || ||||||||||||||    
14261201 agagaatcagcgggttgatttatgaagaaactcg 14261168  T

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