View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_133 (Length: 265)
Name: NF3772_low_133
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_133 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 54817595 - 54817846
Alignment:
| Q |
1 |
ttgaccttaagtttagcctgatcactattaggatcagctttataagcagtaccttcaatgtaacttctttttccaccactccaagtctcattcagaacat |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54817595 |
ttgaccttaagtttagcctcatcactattaggatcagctttataagcagtaccttcaatgtaacttctttttccaccactccaagtctcattcagaacat |
54817694 |
T |
|
| Q |
101 |
tcacagttccatcatctctcagagtgtaggttgctcttgtgttcttaccatcacttggttgaaaccttgatggaaaacacgctatctcgtaccaccgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54817695 |
tcacagttccatcatctctcagagtgtaggttgctcttgtgttcttaccatcacttggttgaaaccttgatggaaaacacgctatctcgtaccaccgacc |
54817794 |
T |
|
| Q |
201 |
catgtaacgcttcaaatccacacctctcgcaatatccatttctttgtttgcc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54817795 |
catgtaacgcttcaaatccacacctctcgcaacatccatttctttgtttgcc |
54817846 |
T |
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