View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_136 (Length: 261)
Name: NF3772_low_136
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_136 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 39983641 - 39983853
Alignment:
| Q |
19 |
agtacatgcttgtcaattgtgctgctgtttctccacttgaatggtatggatttattttgaagaaacattctataataaattaaatgtggcatctaattag |
118 |
Q |
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| T |
39983641 |
agtacatgcttgtcaattgtgctgctgtttctccacttgaatggtatggatttattttgaagaaacattctataataaattaaatgtggcatctaattag |
39983740 |
T |
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| Q |
119 |
agaatcatataagcttgagctacatccgtttttctatttttacttcacatttatctgatttctataccttcattcattgtttatgcattcacaggcatcc |
218 |
Q |
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| T |
39983741 |
agcatcatataagcttgagcta------------------tacttcacatttatctgatttctataccttcattcattgtttatgcattcacaggcatcc |
39983822 |
T |
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| Q |
219 |
attttccataacttctgcccctaatgatgat |
249 |
Q |
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| T |
39983823 |
attttccataacttctgcccctaatgatgat |
39983853 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 44900003 - 44900048
Alignment:
| Q |
194 |
attgtttatgcattcacaggcatccattttccataacttctgcccc |
239 |
Q |
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| T |
44900003 |
attgtttatgctttcacaggcatccattttctataacctccgcccc |
44900048 |
T |
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