View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_138 (Length: 259)

Name: NF3772_low_138
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_138
NF3772_low_138
[»] chr7 (11 HSPs)
chr7 (15-221)||(5806400-5806605)
chr7 (218-259)||(33100058-33100098)
chr7 (218-259)||(47408116-47408156)
chr7 (220-256)||(7312596-7312632)
chr7 (220-259)||(12838303-12838341)
chr7 (220-259)||(17896748-17896786)
chr7 (220-259)||(18470287-18470325)
chr7 (220-259)||(32966274-32966312)
chr7 (220-259)||(35112409-35112447)
chr7 (220-259)||(36406730-36406769)
chr7 (219-259)||(26632404-26632444)
[»] chr2 (7 HSPs)
chr2 (222-259)||(479198-479235)
chr2 (213-259)||(10812172-10812217)
chr2 (217-259)||(34357155-34357196)
chr2 (220-259)||(14295982-14296020)
chr2 (220-259)||(26342560-26342598)
chr2 (220-259)||(32674191-32674229)
chr2 (220-259)||(34399182-34399220)
[»] scaffold0018 (1 HSPs)
scaffold0018 (220-259)||(184350-184388)
[»] chr8 (9 HSPs)
chr8 (220-259)||(14263524-14263562)
chr8 (220-259)||(23429889-23429927)
chr8 (217-259)||(2888690-2888731)
chr8 (222-259)||(38128762-38128798)
chr8 (215-259)||(9954624-9954667)
chr8 (223-259)||(16701115-16701150)
chr8 (223-259)||(18842513-18842548)
chr8 (219-259)||(39303738-39303777)
chr8 (220-256)||(43553020-43553055)
[»] chr6 (6 HSPs)
chr6 (220-259)||(3849045-3849083)
chr6 (220-259)||(9838345-9838383)
chr6 (220-259)||(17193138-17193176)
chr6 (220-259)||(17835873-17835911)
chr6 (220-258)||(23923937-23923974)
chr6 (217-259)||(30388698-30388739)
[»] chr5 (8 HSPs)
chr5 (220-259)||(1795336-1795374)
chr5 (220-259)||(4175699-4175737)
chr5 (220-259)||(7579887-7579925)
chr5 (220-259)||(28463604-28463642)
chr5 (220-259)||(38297836-38297874)
chr5 (220-258)||(3686356-3686393)
chr5 (222-259)||(10889313-10889349)
chr5 (219-259)||(26854313-26854352)
[»] chr4 (11 HSPs)
chr4 (220-259)||(3436290-3436328)
chr4 (220-259)||(16664224-16664262)
chr4 (220-259)||(36408706-36408744)
chr4 (220-259)||(36422872-36422910)
chr4 (220-259)||(37502004-37502042)
chr4 (220-259)||(38617530-38617568)
chr4 (220-259)||(56576326-56576364)
chr4 (217-259)||(22828624-22828665)
chr4 (218-259)||(29295335-29295375)
chr4 (219-259)||(12252082-12252121)
chr4 (219-259)||(31862209-31862248)
[»] chr3 (7 HSPs)
chr3 (220-259)||(790530-790568)
chr3 (220-259)||(41351423-41351461)
chr3 (220-259)||(48214047-48214085)
chr3 (220-259)||(53745509-53745547)
chr3 (217-259)||(20105169-20105210)
chr3 (221-259)||(48151966-48152003)
chr3 (220-252)||(49123538-49123570)
[»] chr1 (5 HSPs)
chr1 (220-259)||(1677196-1677234)
chr1 (220-259)||(28679001-28679039)
chr1 (220-259)||(35531514-35531552)
chr1 (223-259)||(19093251-19093286)
chr1 (212-256)||(35700597-35700640)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 5806605 - 5806400
Alignment:
Q  15 cacagaggattaagaatttcatgtggagaatttccaaacatattcttcccacaagatgcaggctggaacaaaaaggaggtactccggatgctgattgtct 114  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  5806605 cacaaaggattaagaatttcatgtggagagtttccaaacatattcttcccacaagatgctggctggaacaaaaaggagttgctccggatgctgattgtct 5806506  T
Q  115 gctgtgccactgccacaatgacatggaatcacaagaccacctatttatgcattgccaggtaattcgaagcttttggtttatgtccccccgtaggactata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5806505 gctgtgccactgccacaatgacatggaatcacaagaccacctatttatgcattgccaggtaattcgaagcttttggtttatgtcccccc-taggactata 5806407  T
Q  215 tgtacta 221  Q
    |||||||    
T  5806406 tgtacta 5806400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 33100098 - 33100058
Alignment:
Q  218 actactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  33100098 actactccctccgttc-ttttttaagtgtcacttttggagaa 33100058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 47408116 - 47408156
Alignment:
Q  218 actactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  47408116 actactccctccgttcctttt-taagtgtcacttttggagaa 47408156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 7312596 - 7312632
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttgga 256  Q
    |||||||||| ||||||||||||||||||||||||||    
T  7312596 tactccctcctttccttttttaagtgtcacttttgga 7312632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 12838341 - 12838303
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  12838341 tactccctccgttccttttt-aagtgtcacttttggagaa 12838303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 17896786 - 17896748
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  17896786 tactccctccgttccttttt-aagtgtcacttttggagaa 17896748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 18470287 - 18470325
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  18470287 tactccctccgttcctttt-taagtgtcacttttggagaa 18470325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 32966312 - 32966274
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  32966312 tactccctccgttccttttt-aagtgtcacttttggagaa 32966274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 35112409 - 35112447
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  35112409 tactccctccgttcctttt-taagtgtcacttttggagaa 35112447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 36406730 - 36406769
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  36406730 tactccctcctttccttttttaagtgtcacttttgaagaa 36406769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 26632444 - 26632404
Alignment:
Q  219 ctactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||   ||||||||||||||||||||||||    
T  26632444 ctactccctccgttttctttttaagtgtcacttttggagaa 26632404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 479235 - 479198
Alignment:
Q  222 ctccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  479235 ctccctccgttccttttttaagtgtcacttttggagaa 479198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 10812172 - 10812217
Alignment:
Q  213 tatgtactactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  10812172 tatgtaatactccctccgttcctttt-taagtgtcacttttggagaa 10812217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 34357155 - 34357196
Alignment:
Q  217 tactactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  34357155 tactactccctccgttcctttt-taagtgtcacttttggagaa 34357196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 14296020 - 14295982
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  14296020 tactccctccgttccttttt-aagtgtcacttttggagaa 14295982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 26342560 - 26342598
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  26342560 tactccctccgttcctttt-taagtgtcacttttggagaa 26342598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 32674191 - 32674229
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  32674191 tactccctccgttcctttt-taagtgtcacttttggagaa 32674229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 34399182 - 34399220
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  34399182 tactccctccgttcctttt-taagtgtcacttttggagaa 34399220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 184388 - 184350
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  184388 tactccctccgttccttttt-aagtgtcacttttggagaa 184350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 14263524 - 14263562
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14263524 tactccctccgttcctttt-taagtgtcacttttggagaa 14263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 23429889 - 23429927
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  23429889 tactccctccgttcctttt-taagtgtcacttttggagaa 23429927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 2888731 - 2888690
Alignment:
Q  217 tactactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  2888731 tactactccctccgttcct-ttttaagtgtctcttttggagaa 2888690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 38128798 - 38128762
Alignment:
Q  222 ctccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||| |||||||||||||||||||    
T  38128798 ctccctccgttccttttt-aagtgtcacttttggagaa 38128762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 9954624 - 9954667
Alignment:
Q  215 tgtactactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||    
T  9954624 tgtattacttcctccgttcctttt-taagtgtcacttttggagaa 9954667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 16701150 - 16701115
Alignment:
Q  223 tccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||| |||||||||||||||||||    
T  16701150 tccctccgttccttttt-aagtgtcacttttggagaa 16701115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 18842513 - 18842548
Alignment:
Q  223 tccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18842513 tccctccgttcctttt-taagtgtcacttttggagaa 18842548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 39303777 - 39303738
Alignment:
Q  219 ctactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  39303777 ctactccctccgttcct-ttttaagtgtcatttttggagaa 39303738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 43553020 - 43553055
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttgga 256  Q
    ||||||||||||||||||| |||||||||||||||||    
T  43553020 tactccctccgttcctttt-taagtgtcacttttgga 43553055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 3849045 - 3849083
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  3849045 tactccctccgttcctttt-taagtgtcacttttggagaa 3849083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 9838383 - 9838345
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  9838383 tactccctccgttccttttt-aagtgtcacttttggagaa 9838345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 17193138 - 17193176
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  17193138 tactccctccgttcctttt-taagtgtcacttttggagaa 17193176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 17835873 - 17835911
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  17835873 tactccctccgttcctttt-taagtgtcacttttggagaa 17835911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 23923974 - 23923937
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggaga 258  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23923974 tactccctccgttccttttt-aagtgtcacttttggaga 23923937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 30388698 - 30388739
Alignment:
Q  217 tactactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  30388698 tactactccctccgttcc-tttttaagtgtcacttttgaagaa 30388739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 1795374 - 1795336
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1795374 tactccctccgttccttttt-aagtgtcacttttggagaa 1795336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 4175737 - 4175699
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  4175737 tactccctccgttccttttt-aagtgtcacttttggagaa 4175699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 7579925 - 7579887
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  7579925 tactccctccgttccttttt-aagtgtcacttttggagaa 7579887  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 28463642 - 28463604
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  28463642 tactccctccgttccttttt-aagtgtcacttttggagaa 28463604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 38297874 - 38297836
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  38297874 tactccctccgttccttttt-aagtgtcacttttggagaa 38297836  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 3686356 - 3686393
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggaga 258  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  3686356 tactccctccgttcctttt-taagtgtcacttttggaga 3686393  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 10889349 - 10889313
Alignment:
Q  222 ctccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10889349 ctccctccgttccttttt-aagtgtcacttttggagaa 10889313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 26854352 - 26854313
Alignment:
Q  219 ctactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  26854352 ctactccctctgttccttttt-aagtgtcacttttggagaa 26854313  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 3436328 - 3436290
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  3436328 tactccctccgttccttttt-aagtgtcacttttggagaa 3436290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 16664224 - 16664262
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  16664224 tactccctccgttcctttt-taagtgtcacttttggagaa 16664262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 36408706 - 36408744
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  36408706 tactccctccgttcctttt-taagtgtcacttttggagaa 36408744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 36422872 - 36422910
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  36422872 tactccctccgttcctttt-taagtgtcacttttggagaa 36422910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 37502004 - 37502042
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  37502004 tactccctccgttcctttt-taagtgtcacttttggagaa 37502042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 38617568 - 38617530
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  38617568 tactccctccgttccttttt-aagtgtcacttttggagaa 38617530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 56576364 - 56576326
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  56576364 tactccctccgttccttttt-aagtgtcacttttggagaa 56576326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 22828665 - 22828624
Alignment:
Q  217 tactactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  22828665 tactactccctccgttcct-ttttaagtgtctcttttggagaa 22828624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 29295335 - 29295375
Alignment:
Q  218 actactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  29295335 actactccctcctttcctttt-taagtgtcacttttggagaa 29295375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 12252082 - 12252121
Alignment:
Q  219 ctactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  12252082 ctactccctccgttcc-tttttaagtgtcacttttgaagaa 12252121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 31862248 - 31862209
Alignment:
Q  219 ctactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  31862248 ctactccctccgttcct-ttttaagtgtctcttttggagaa 31862209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 790530 - 790568
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  790530 tactccctccgttcctttt-taagtgtcacttttggagaa 790568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 41351461 - 41351423
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  41351461 tactccctccgttc-ttttttaagtgtcacttttggagaa 41351423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 48214047 - 48214085
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  48214047 tactccctccgttcctttt-taagtgtcacttttggagaa 48214085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 53745547 - 53745509
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  53745547 tactccctccgttccttttt-aagtgtcacttttggagaa 53745509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 20105169 - 20105210
Alignment:
Q  217 tactactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  20105169 tactactacctccgttcctttt-taagtgtcacttttggagaa 20105210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 48151966 - 48152003
Alignment:
Q  221 actccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  48151966 actccctccgttcctttt-taagtgtcacttttggagaa 48152003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 49123538 - 49123570
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttt 252  Q
    ||||||||||||| |||||||||||||||||||    
T  49123538 tactccctccgtttcttttttaagtgtcacttt 49123570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 1677196 - 1677234
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  1677196 tactccctccgttcctttt-taagtgtcacttttggagaa 1677234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 28679001 - 28679039
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  28679001 tactccctccgttcctttt-taagtgtcacttttggagaa 28679039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 35531552 - 35531514
Alignment:
Q  220 tactccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  35531552 tactccctccgttccttttt-aagtgtcacttttggagaa 35531514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 19093251 - 19093286
Alignment:
Q  223 tccctccgttccttttttaagtgtcacttttggagaa 259  Q
    |||||||||||||||| ||||||||||||||||||||    
T  19093251 tccctccgttcctttt-taagtgtcacttttggagaa 19093286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 35700640 - 35700597
Alignment:
Q  212 atatgtactactccctccgttccttttttaagtgtcacttttgga 256  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||    
T  35700640 atatttactactccctccgtttcttttt-aagtgtcacttttgga 35700597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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