View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_139 (Length: 258)
Name: NF3772_low_139
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_139 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 12263972 - 12264220
Alignment:
| Q |
11 |
cataggtagtgaactaatccggattgtctaaaattttctcatactaaactacttaataatttcttctttttatttacnnnnnnnnn--acctatacttca |
108 |
Q |
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| T |
12263972 |
cataggtagtgaactaatccggattgtctaaaattttctcatactaaactacttaataatttcttctttttatttactttttttttttacctatacttca |
12264071 |
T |
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| Q |
109 |
tcaaacaaataatgtgtaaaaaaggtacgaactaatttattctgatttgnnnnnnnnncaatgacttaaaagaatgcttttattcctcttaaacaatgct |
208 |
Q |
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| T |
12264072 |
tcaaacaaataatgtgtaaaaaaggtacgaactaatttattctgatttgtttttttt-caatgacttaaaagaatgcttttattcctcttaaacaatgct |
12264170 |
T |
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| Q |
209 |
tttatttttctccgagactaaatttgattttaaaattttcttagggattc |
258 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12264171 |
tttatttttctcggagactaaatttgattttaaaattttcttagggattc |
12264220 |
T |
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