View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_14 (Length: 573)
Name: NF3772_low_14
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 27 - 560
Target Start/End: Original strand, 34542095 - 34542619
Alignment:
| Q |
27 |
ggaattcattaattaggttaattaaactaaacaaatacaacaacattgtttggagtactagttcatcatgataatgataataaaggaactatgtaacata |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34542095 |
ggaattcattaattaggttaattaaactaaacaaatacaacaacattgtttggagtactagttcat------aatgataataaaggaactatgtaacata |
34542188 |
T |
|
| Q |
127 |
aattacacagaaaaaggaaattctacattcatttccatatccattccgatcccttttcccaaaatttacaatgatatcctcctaaaactacttacccaaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34542189 |
aattacacagaaaaaggaaattctacattcatttccatatccattcccatcccttttcccaaaatttacaatgatatcctcctaaaactacttacccaaa |
34542288 |
T |
|
| Q |
227 |
attcaatcccaaacccacgaggggcaaaaaaggaaaagtgaaggacattgtcgtcatttcaatttgtcacataactttccatgaagattcaagagtggga |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34542289 |
attcaatcccaaacccacgaggggcaaaaaaggaaaagtgaaggacattgtcgtcatttcaatttgtcacataactttccatgaagattcaagagtggga |
34542388 |
T |
|
| Q |
327 |
aaacaactcgagaaagtttcaaaatcataacctgcagcatcttcaccaatgggctggccgaaagagagtgggcccagcccagtcattacaggcccatcag |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34542389 |
aaacaactcgagaaagtttcaaaatcataacctgcagcatcttcaccaatgggctggccgaaagagagtgggcccagcccagtcatttcaggcccatcag |
34542488 |
T |
|
| Q |
427 |
aattaggacccaccattgtttgttgctgctgttggtggtggtgttgtagtaaaaaagctgacgtgtcaagcgtcggtaaacaccctccaccagtcgtaaa |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34542489 |
aattaggacccaccattgtttgttgctgctgt---tggtggtgttgtagtaaaaaagctgacgtatcaagcgtcggtaaacaccctccaccagtcgtaaa |
34542585 |
T |
|
| Q |
527 |
cctccctcctccgttaactcccaccgccctatgc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34542586 |
cctccctcctccgttaactcccaccgccctatgc |
34542619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University