View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_140 (Length: 258)
Name: NF3772_low_140
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_140 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 28305144 - 28304916
Alignment:
| Q |
12 |
taatactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcaggaccaag |
111 |
Q |
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| T |
28305144 |
taatactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcagggccaag |
28305045 |
T |
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| Q |
112 |
aaggttcacctacaaagaacttgatttggcaaccaataacttttcgaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttacttt |
211 |
Q |
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| T |
28305044 |
gaggtttacctacaaagaacttgagttggcaaccaataacttttctaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttacttt |
28304945 |
T |
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| Q |
212 |
gctgatttagatttacaagttgctgtgaa |
240 |
Q |
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| T |
28304944 |
gctgatttagatttacaagttgctgtgaa |
28304916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 28265126 - 28264899
Alignment:
| Q |
12 |
taatactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcaggaccaag |
111 |
Q |
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| T |
28265126 |
taatactaaagaggaaaagagag-gaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcagggccaag |
28265028 |
T |
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| Q |
112 |
aaggttcacctacaaagaacttgatttggcaaccaataacttttcgaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttacttt |
211 |
Q |
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| T |
28265027 |
gaggtttacctacaaagaacttgagttggcaaccaataacttttctaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttacttt |
28264928 |
T |
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| Q |
212 |
gctgatttagatttacaagttgctgtgaa |
240 |
Q |
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| T |
28264927 |
gctgatttagatttacaagttgctgtgaa |
28264899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 28294932 - 28294714
Alignment:
| Q |
22 |
gaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcaggaccaagaaggttcacc |
121 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
28294932 |
gaggaaaagaaagagaagtaataagcaaaaggaagaggctatgcatttgacttcaatgaatgatgatcttgaaagaggagcagggccaagaaggttcacc |
28294833 |
T |
|
| Q |
122 |
tacaaagaacttgatttggcaaccaataacttttcgaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttactttgctgatttag |
221 |
Q |
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| T |
28294832 |
tacaaagaacttgatttggcaaccaataacttctctaaggatagaaagttgggtcaaggtggttttggagctgtttataaaggttactttgctgatttag |
28294733 |
T |
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| Q |
222 |
atttacaagttgctgtgaa |
240 |
Q |
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| T |
28294732 |
atttacaagttgctgtgaa |
28294714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 28288619 - 28288808
Alignment:
| Q |
22 |
gaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcaggaccaagaaggttcacc |
121 |
Q |
| |
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|||||||| |||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||| ||||| ||| |
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| T |
28288619 |
gaggaaaataaagagaagtaaaaagaaaaaggaagaggctatgcatttaagaacaatgaatgatgaccttcaaagaggagcagggccaaggaggtttacc |
28288718 |
T |
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| Q |
122 |
tacaaagaacttgatttggcaaccaataacttttcgaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttacttt |
211 |
Q |
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| T |
28288719 |
taccaagaacttgatttggctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagctgtttataaaggttacttt |
28288808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 28278763 - 28278972
Alignment:
| Q |
31 |
aaagagaagtgaaaagcaaaaggaagaggctatgcatttgacttcaatgaatgatgaccttgaaagaggagcaggaccaagaaggttcacctacaaagaa |
130 |
Q |
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||||||||| |||| ||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
28278763 |
aaagagaagaaaaaaagaaaaggaagaggctatgagtttaacttcaatgaatgacgatcttgaaagaggagcagggccaaggaggttcacctacaaagaa |
28278862 |
T |
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| Q |
131 |
cttgatttggcaaccaataacttttcgaaggatagaaagttgggtcaaggtggttttggagcagtttttaaaggttactttgctgatttagatttacaag |
230 |
Q |
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| T |
28278863 |
cttaatttagccactaataacttctctagggatagaaagttgggtcaaggtgggtttggagctgtatataaaggtaacttttttgatccagatttaccgg |
28278962 |
T |
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| Q |
231 |
ttgctgtgaa |
240 |
Q |
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|||||||||| |
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| T |
28278963 |
ttgctgtgaa |
28278972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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