View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_141 (Length: 255)
Name: NF3772_low_141
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_141 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 9585363 - 9585594
Alignment:
| Q |
13 |
ccaccaacatcattcaatctaattttttgactaatgaaattcaaatataataaattttacaatgcacgccttgtctaatctttgtgtcttaatttaatct |
112 |
Q |
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| T |
9585363 |
ccaccaacatcattcaatctaattttttgactaatgaaattcaaatataataaattttacaatgcacgccttgtctaatctttgtgtcttaatttaatct |
9585462 |
T |
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| Q |
113 |
caatcagtcaatctatgtttcaaatttcaaatatatatgtaaagaaaataatacatgaggtnnnnnnnnctcttttggttcataaaagaagcatccaaac |
212 |
Q |
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| T |
9585463 |
caatcagtcaatctatgtttcaaatttcaaatatatatgtgaagaaaataatacatgaggt-gggggggctcttttggttcataaaagaagcatccaaac |
9585561 |
T |
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| Q |
213 |
caagtagtaattagtggtatctgcagctttcat |
245 |
Q |
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| T |
9585562 |
caagtagtaattagtggtatctgcagctttcat |
9585594 |
T |
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