View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_146 (Length: 252)
Name: NF3772_low_146
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_146 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9997089 - 9996848
Alignment:
| Q |
1 |
cgcaaagacatatggaattccagttgctctggattcaagagcagttgcttcaccaatcttcttcactagttgagggtccctgcaagttaggatatagaaa |
100 |
Q |
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| T |
9997089 |
cgcaaagacatatggaattccagttgctctggattcaagagcagttgcttcaccaatcttcttcactagttgagggtccctgcaagttaggatatagaaa |
9996990 |
T |
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| Q |
101 |
atctatcatcaatacaaagagttatagtgaaaaaagcattttctttgggtaattaactttcattcgatcaacatgtcattagtcagtttgatcctcaaat |
200 |
Q |
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| T |
9996989 |
atctatcatcaatacaaagagttatagtgaaaaaagctttttctttgtgtaattaactttcattcgatcaacatgtcattagtcagtttgatcctcaaat |
9996890 |
T |
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| Q |
201 |
ttatattttgttagttaatttgattcttgaatgtgtcctttg |
242 |
Q |
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| T |
9996889 |
ttatattttgttagttaatttgattctcgaatgtgtcctttg |
9996848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 10002941 - 10002785
Alignment:
| Q |
2 |
gcaaagacatatggaattccagttgctctggattcaagagcagttgcttcaccaatcttcttcactagttgagggtccctgcaagttaggatatagaaaa |
101 |
Q |
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| T |
10002941 |
gcaaagacatatggaattccagttgctctggattcaagagcggttgcttcaccaatcttcttcaccagttgagggtccctgcaatttgggatataaaaaa |
10002842 |
T |
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| Q |
102 |
tctatcatcaatacaaagagttatagtgaaaaaa---gcattttctttgggtaatta |
155 |
Q |
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| T |
10002841 |
tacatcatcaatacaaagagtcatagtgaaaaaaaaggcattttctttgtgtaatta |
10002785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 9990317 - 9990234
Alignment:
| Q |
5 |
aagacatatggaattccagttgctctggattcaagagcagttgcttcaccaatcttcttcactagttgagggtccctgcaagtt |
88 |
Q |
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| T |
9990317 |
aagacatatggaattccagttgctctagcttcaagagcagttgcatcaccaatcttcttcactagttgagggtccctgcaagtt |
9990234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 10011869 - 10011790
Alignment:
| Q |
5 |
aagacatatggaattccagttgctctggattcaagagcagttgcttcaccaatcttcttcactagttgagggtccctgca |
84 |
Q |
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| T |
10011869 |
aagacatatggaattcccgttgctctagcttcaagagcagttgcttcaccaattctcctcactagttgagggtccctgca |
10011790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 10002716 - 10002653
Alignment:
| Q |
174 |
tgtcattagtcagtttgatcctcaaatttatattttgttagttaatttgattcttgaatgtgtc |
237 |
Q |
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| T |
10002716 |
tgtcattagtctatttgatcctcaaatttgtctttcgttagttagtttgattctcgaatgtgtc |
10002653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 4801728 - 4801791
Alignment:
| Q |
176 |
tcattagtcagtttgatcctcaaatttatattttgttagttaatttgattcttgaatgtgtcct |
239 |
Q |
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||||||||| |||||||||| ||| ||| |||||||||||| |||||| ||||||||||||| |
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| T |
4801728 |
tcattagtcggtttgatccttgaatgtattttttgttagttagtttgatctttgaatgtgtcct |
4801791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 35991189 - 35991131
Alignment:
| Q |
2 |
gcaaagacatatggaattccagttgctctggattcaagagcagttgcttcaccaatctt |
60 |
Q |
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||||| ||||||||||||||||| ||||| |||||| ||||||||||| |||||||| |
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| T |
35991189 |
gcaaacacatatggaattccagtagctctaacttcaagggcagttgcttctccaatctt |
35991131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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