View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_149 (Length: 250)

Name: NF3772_low_149
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_149
NF3772_low_149
[»] chr6 (13 HSPs)
chr6 (47-239)||(12964137-12964329)
chr6 (19-194)||(20424098-20424271)
chr6 (47-194)||(14854211-14854357)
chr6 (92-245)||(28197468-28197618)
chr6 (19-186)||(923854-924019)
chr6 (35-152)||(20133933-20134051)
chr6 (38-144)||(20155655-20155760)
chr6 (38-144)||(22177072-22177177)
chr6 (35-152)||(22198818-22198936)
chr6 (115-194)||(25179174-25179252)
chr6 (19-186)||(8764970-8765135)
chr6 (183-245)||(12048482-12048544)
chr6 (50-110)||(4113282-4113342)
[»] chr8 (4 HSPs)
chr8 (47-239)||(28504146-28504338)
chr8 (19-186)||(25746467-25746632)
chr8 (19-186)||(15017631-15017796)
chr8 (35-95)||(3996632-3996692)
[»] chr2 (10 HSPs)
chr2 (47-239)||(29438841-29439031)
chr2 (47-245)||(17259768-17259966)
chr2 (19-245)||(18085304-18085521)
chr2 (19-186)||(22699611-22699778)
chr2 (92-194)||(10115890-10115991)
chr2 (42-194)||(21693428-21693576)
chr2 (42-194)||(21708210-21708358)
chr2 (35-96)||(4727867-4727928)
chr2 (35-96)||(15714078-15714139)
chr2 (35-95)||(15706263-15706323)
[»] chr7 (10 HSPs)
chr7 (47-239)||(34194110-34194292)
chr7 (47-239)||(34196428-34196610)
chr7 (42-231)||(10839682-10839869)
chr7 (115-194)||(30242035-30242112)
chr7 (116-194)||(15853801-15853877)
chr7 (115-194)||(16036447-16036524)
chr7 (115-194)||(16051174-16051251)
chr7 (48-152)||(7368684-7368791)
chr7 (35-96)||(18137159-18137220)
chr7 (35-144)||(23831526-23831636)
[»] chr3 (26 HSPs)
chr3 (47-245)||(28166361-28166557)
chr3 (19-194)||(15476266-15476439)
chr3 (19-194)||(9095836-9096009)
chr3 (19-194)||(10930211-10930384)
chr3 (19-194)||(19628197-19628370)
chr3 (92-194)||(23012142-23012241)
chr3 (19-186)||(18922135-18922300)
chr3 (19-186)||(29942176-29942341)
chr3 (19-186)||(29991330-29991495)
chr3 (115-194)||(14142106-14142186)
chr3 (19-186)||(16615242-16615407)
chr3 (19-186)||(22051453-22051618)
chr3 (42-194)||(18525405-18525553)
chr3 (115-194)||(1986067-1986144)
chr3 (35-152)||(19364475-19364593)
chr3 (35-96)||(4716696-4716757)
chr3 (35-96)||(4731876-4731937)
chr3 (35-96)||(6212145-6212206)
chr3 (35-96)||(18325737-18325798)
chr3 (35-96)||(18340836-18340897)
chr3 (35-96)||(32964727-32964788)
chr3 (35-106)||(19088714-19088785)
chr3 (35-96)||(6187378-6187439)
chr3 (115-194)||(4653745-4653822)
chr3 (35-106)||(17787193-17787264)
chr3 (50-106)||(15364689-15364745)
[»] chr1 (8 HSPs)
chr1 (47-231)||(9193187-9193369)
chr1 (19-186)||(20456133-20456298)
chr1 (19-186)||(20541381-20541546)
chr1 (19-186)||(15816658-15816825)
chr1 (19-194)||(31447953-31448125)
chr1 (19-186)||(16230233-16230398)
chr1 (35-143)||(47663394-47663503)
chr1 (20-111)||(5137195-5137286)
[»] scaffold0211 (1 HSPs)
scaffold0211 (19-194)||(11397-11570)
[»] scaffold0143 (1 HSPs)
scaffold0143 (42-231)||(22336-22523)
[»] scaffold0127 (1 HSPs)
scaffold0127 (19-186)||(26074-26239)
[»] chr4 (14 HSPs)
chr4 (88-245)||(14240298-14240453)
chr4 (19-186)||(15386807-15386972)
chr4 (19-155)||(12785148-12785283)
chr4 (19-194)||(15237820-15237993)
chr4 (19-194)||(17094561-17094734)
chr4 (19-194)||(15219064-15219237)
chr4 (19-186)||(18465530-18465695)
chr4 (35-161)||(15082102-15082229)
chr4 (42-194)||(1895348-1895496)
chr4 (42-194)||(15651850-15651998)
chr4 (35-96)||(5316679-5316740)
chr4 (42-179)||(16245365-16245501)
chr4 (115-194)||(1910227-1910304)
chr4 (18-80)||(17086409-17086471)
[»] chr5 (16 HSPs)
chr5 (19-186)||(37295127-37295309)
chr5 (48-235)||(20580428-20580615)
chr5 (19-194)||(24612605-24612778)
chr5 (19-194)||(24672230-24672403)
chr5 (19-194)||(24709007-24709180)
chr5 (19-194)||(24742001-24742174)
chr5 (19-194)||(24754770-24754943)
chr5 (19-186)||(21500785-21500950)
chr5 (19-186)||(19864180-19864345)
chr5 (20-111)||(25210342-25210433)
chr5 (20-111)||(25274497-25274588)
chr5 (92-194)||(28898728-28898829)
chr5 (92-194)||(28935123-28935224)
chr5 (20-111)||(25194932-25195023)
chr5 (35-96)||(22989033-22989094)
chr5 (35-96)||(23004100-23004161)
[»] scaffold0031 (2 HSPs)
scaffold0031 (157-245)||(125720-125808)
scaffold0031 (42-99)||(125648-125705)
[»] scaffold0055 (1 HSPs)
scaffold0055 (115-194)||(7772-7850)
[»] scaffold0052 (1 HSPs)
scaffold0052 (115-194)||(76685-76763)
[»] scaffold0393 (1 HSPs)
scaffold0393 (35-152)||(6498-6616)
[»] scaffold0184 (1 HSPs)
scaffold0184 (116-194)||(22306-22382)
[»] scaffold0078 (1 HSPs)
scaffold0078 (116-194)||(50462-50538)
[»] scaffold0049 (1 HSPs)
scaffold0049 (19-82)||(37428-37491)
[»] scaffold0954 (1 HSPs)
scaffold0954 (42-194)||(2393-2542)
[»] scaffold0092 (1 HSPs)
scaffold0092 (115-194)||(17095-17172)
[»] scaffold0062 (1 HSPs)
scaffold0062 (35-95)||(55175-55235)
[»] scaffold0021 (1 HSPs)
scaffold0021 (18-106)||(179508-179596)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 12964329 - 12964137
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagta 146  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  12964329 atgaatgattgatatgctattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-tgatgtgatttgttagtttcttgtgttgcaagta 12964231  T
Q  147 atgtgtttctttttt-acattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctat 239  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12964230 atgtgtttctttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttgctcacttgttctatcattttacaccctat 12964137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 20424098 - 20424271
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  20424098 ttttgttcataatattttgatatatgatatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 20424196  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||| ||||||||||||||| |||||||||||||||  |||||| ||| || |||||| | |||||| |||||||    
T  20424197 gattttttagtttcttgtgtttcaagtaatgtgtttc-cttttacgtttcggctattgtcgtcattttcaccgttt 20424271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 14854211 - 14854357
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttg-ttttactattttgtgatgtgatttgttagtttcttgtgttgcaagt 145  Q
    ||||||||||||| ||| ||||||||||||||| |||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  14854211 atgaatgattgatatgctattttgtgatgaatacgcctctgatcatgtgtttgtttttactgtttt-tgatgtgatttgttagtttcttgtgtcgcaagt 14854309  T
Q  146 aatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    | ||| ||||  ||| |  ||||||||||||||| ||||||||||||||    
T  14854310 attgtatttc-ctttcatgttttggttattgttgtcatttttaccgttt 14854357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 28197618 - 28197468
Alignment:
Q  92 tgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccg 191  Q
    |||| |||||||||| |||  ||||||||||||||| |||||| |||| ||||||||||||    |||||||||||||||||||||||   ||||||||     
T  28197618 tgtgattgttttactgttta-tgatgtgatttgttaatttcttttgttacaagtaatgtgtac--tttttacattttggttattgttgttgtttttacca 28197522  T
Q  192 tttatctcgtattcctttcctcacttgttctatcattttacaccctatgctact 245  Q
    ||||||||||||| |||| || |||||| |||| |||||| ||||||| |||||    
T  28197521 tttatctcgtatttctttgcttacttgtcctattattttataccctattctact 28197468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 923854 - 924019
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  923854 ttttgttcataatatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 923952  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  923953 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 924019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 20133933 - 20134051
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactatt-ttgtgatgtgatttgttagtttct 133  Q
    ||||||||||| |||| |||||| | |||||||||||||||||||||||||| ||||| ||| ||||||||| ||  |||||||| | || | | |||||    
T  20133933 ttgatatatgatatgagtgattggtatgcaattttgtgatgaatatgcctctgatcatatgtgtgttttactgttcatgtgatgtaaattttcaatttct 20134032  T
Q  134 tgtgttgcaagtaatgtgt 152  Q
    ||| |||||||||||||||    
T  20134033 tgttttgcaagtaatgtgt 20134051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 20155655 - 20155760
Alignment:
Q  38 atatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtg 137  Q
    |||| ||||||| ||||||||| |||||| || |||||||||||| ||| ||||||||||| ||||||| ||||| |||||||||||| | ||||||||     
T  20155655 atatgtgacatggatgattgatatgcaatattatgatgaatatgcatctgatcatgtgttttttttactgttttg-gatgtgatttgtaaatttcttgtt 20155753  T
Q  138 ttgcaag 144  Q
    |||||||    
T  20155754 ttgcaag 20155760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 22177177 - 22177072
Alignment:
Q  38 atatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtg 137  Q
    |||| ||||||| ||||||||| |||||| || |||||||||||| ||| ||||||||||| ||||||| ||||| |||||||||||| | ||||||||     
T  22177177 atatgtgacatggatgattgatatgcaatattatgatgaatatgcatctgatcatgtgttttttttactgttttg-gatgtgatttgtaaatttcttgtt 22177079  T
Q  138 ttgcaag 144  Q
    |||||||    
T  22177078 ttgcaag 22177072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 22198936 - 22198818
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactatt-ttgtgatgtgatttgttagtttct 133  Q
    ||||||||||| |||| |||||| | |||||||||||||||||||||||||| ||||| ||| ||||||||| ||  |||||||| | || | | |||||    
T  22198936 ttgatatatgatatgagtgattggtatgcaattttgtgatgaatatgcctctgatcatatgtgtgttttactgttcatgtgatgtaaattttcaatttct 22198837  T
Q  134 tgtgttgcaagtaatgtgt 152  Q
    ||| |||||||||||||||    
T  22198836 tgttttgcaagtaatgtgt 22198818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 25179174 - 25179252
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||    
T  25179174 atgtgatttgttaatttcttttgttacaagtaatgtgtatttttttt-cattttggttattgttgtcatttttaccgttt 25179252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 8764970 - 8765135
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| |||||  | |||||| ||||||||||||||   || ||||| || |||| || || |||| | || |    
T  8764970 ttttgttcataatatcttgatccatggtatgagtgattattatgcaatcttgtgatgaatatggtactgatcatatgcttgtgttgctgtttt-taatat 8765068  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||| | |||||||||||||| | ||||||    
T  8765069 gttttgttagtttcttgtgtttcaagtaatgtgtttc-ctttcatattttggttattgtcgtcatttt 8765135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 12048544 - 12048482
Alignment:
Q  183 tttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctatgctact 245  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||||  |||||| |||||    
T  12048544 tttttaccgtttatctcgtatttctttgcttacttgttctatcattttatgccctattctact 12048482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 4113342 - 4113282
Alignment:
Q  50 aatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattt 110  Q
    |||||||||| ||||||||   |||||||||| |||| ||||| ||| |||||||||||||    
T  4113342 aatgattgatatgcaatttcacgatgaatatgtctctgatcatatgtgtgttttactattt 4113282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 28504338 - 28504146
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagta 146  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28504338 atgaatgattgatatgctattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-tgatgtgatttgttagtttcttgtgttgcaagta 28504240  T
Q  147 atgtgtttctttttt-acattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctat 239  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  28504239 atgtgtttctttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttgctcagttgttctatcattttacaccctat 28504146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 25746467 - 25746632
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    ||||||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  25746467 ttttgttcataacattttgatatatgatatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 25746565  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||||| ||||||||| ||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  25746566 gattttttagtttctcgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 25746632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 15017631 - 15017796
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  15017631 ttttgttcataatatcttgatccatggtatgattgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 15017729  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  15017730 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 15017796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 3996632 - 3996692
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtg 95  Q
    ||||||| |||||||||||| |||||   ||| |||||||||||||||||||  |||||||    
T  3996632 ttgatatgtgacatgaatgaatgatgcctaatattgtgatgaatatgcctctggtcatgtg 3996692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 29439031 - 29438841
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagta 146  Q
    ||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  29439031 atgaatgattgatatgcaattttgtgatggatatgcctctgaccatgtgtttgttttactgtttt-tgatgtgatttgttagtttcttgtgttgcaagta 29438933  T
Q  147 atgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctat 239  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  29438932 atgtgtat-ttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttgctcacttgttctatcattttacgccctat 29438841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 17259768 - 17259966
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttt-tactattttgtgatgtgatttgttagtttcttgtgttgcaagt 145  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||    
T  17259768 atgaatgattgatatgcaattttgtgatggatatgcctctgatcatgtgtttgtttgtactgtttt-tgatgtgatttgttagtttcttgtgttgcaagt 17259866  T
Q  146 aatgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctatgctact 245  Q
    ||||||| | ||||||||||||||||||||||||   |||||||||||||||||||||| |||| || ||||||||||||||||||  |||||| |||||    
T  17259867 aatgtgtattttttttacattttggttattgttgttgtttttaccgtttatctcgtatttctttgcttacttgttctatcattttatgccctattctact 17259966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 18085304 - 18085521
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttt-tactattttgtgatg 117  Q
    ||||||| |||| || ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||| |||| ||||     
T  18085304 ttttgttgataatattttgatatatgatatgaatgattgatatgcaattttgtgatggatatgcctctgatcatgtgtttgtttgtactgtttt-tgata 18085402  T
Q  118 tgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcactt 217  Q
    |||||||||| |||||||||||||||||||||||  |  ||||||||||       |||||||||||||||||||||||||| |||| |||| || ||||    
T  18085403 tgatttgttaatttcttgtgttgcaagtaatgtg--tactttttacatt-------ttgttgacatttttaccgtttatctcatatttctttgctaactt 18085493  T
Q  218 gttctatcattttacaccctatgctact 245  Q
    ||||||||||||||  |||||| |||||    
T  18085494 gttctatcattttatgccctattctact 18085521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 22699611 - 22699778
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  22699611 ttttgttcataatattttgatatatgatatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 22699709  T
Q  119 ga--tttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||  ||| ||||||||| ||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  22699710 gattttttttagtttctcgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 22699778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 10115991 - 10115890
Alignment:
Q  92 tgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccg 191  Q
    |||| |||||||||| |||| |||||||||||| | ||| ||||| ||||||||| |||||||| | ||||||| ||||||||||| ||| |||||||||    
T  10115991 tgtgattgttttactgttttttgatgtgatttgcttgttccttgtattgcaagtagtgtgtttc-tctttacatgttggttattgtcgacgtttttaccg 10115893  T
Q  192 ttt 194  Q
    |||    
T  10115892 ttt 10115890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 21693576 - 21693428
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgc 141  Q
    |||| |||| |||||||| ||||||||  || |||||||||  ||  |  |||| |||||||||| ||||   ||||||||||||| |||||| |||| |    
T  21693576 atgatatgagtgattgatatgcaatttcatgttgaatatgctactggttgtgtgattgttttactgtttta--atgtgatttgttaatttcttttgttac 21693479  T
Q  142 aagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||  |  ||||||||||||||||||||||| || |||| ||||||    
T  21693478 aagtaatgtgcat--tttttacattttggttattgttgtcacttttgccgttt 21693428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 21708358 - 21708210
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgc 141  Q
    |||| |||| |||||||| ||||||||  || |||||||||  ||  |  |||| |||||||||| ||||   ||||||||||||| |||||| |||| |    
T  21708358 atgatatgagtgattgatatgcaatttcatgttgaatatgctactggttgtgtgattgttttactgtttta--atgtgatttgttaatttcttttgttac 21708261  T
Q  142 aagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||  |  ||||||||||||||||||||||| || |||| ||||||    
T  21708260 aagtaatgtgcat--tttttacattttggttattgttgtcacttttgccgttt 21708210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 4727928 - 4727867
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  4727928 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 4727867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 15714139 - 15714078
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  15714139 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 15714078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 15706323 - 15706263
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtg 95  Q
    ||||||| |||||||||||| |||||   ||| |||||||||||||||||||  |||||||    
T  15706323 ttgatatgtgacatgaatgaatgatgcctaatattgtgatgaatatgcctctggtcatgtg 15706263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 34194110 - 34194292
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagta 146  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  34194110 atgaatgattgatatgctattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-tgatgtgatttgttagtttcttgtgttgcaagta 34194208  T
Q  147 atgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctat 239  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  34194209 atgtgtttctttt-tacattttggttattgttgacatttttaccgtttatctcgtattcct--------ttgttctatcattttacaccctat 34194292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 34196610 - 34196428
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagta 146  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  34196610 atgaatgattgatatgctattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-tgatgtgatttgttagtttcttgtgttgcaagta 34196512  T
Q  147 atgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctat 239  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  34196511 atgtgtttcttttt-acattttggttattgttgacatttttaccgtttatctcgtattcct--------ttgttctatcattttacaccctat 34196428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 10839869 - 10839682
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttt-tactattttgtgatgtgatttgttagtttcttgtgttg 140  Q
    |||| ||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||||| |||| |||| |||||||||||| || ||||||||||||    
T  10839869 atgatatgaatgattgatatgcaatttcgtggtgaatatgtctctgatcatgtgtttgtttgtactgtttt-tgatgtgatttgctaatttcttgtgttg 10839771  T
Q  141 caagtaatgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcatttta 231  Q
    |||||||||||  |  |||||||||||||||||||||||    ||||||||||||||||||||| |||| || ||||||||||||||||||    
T  10839770 caagtaatgtg--tactttttacattttggttattgttgttgcttttaccgtttatctcgtatttctttgcttacttgttctatcatttta 10839682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 30242112 - 30242035
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||| |  ||||||||||||||||||| ||| ||||||||||||||    
T  30242112 atgtgatttgttaatttcttttgttacaagtaatgtgtat--tttttacattttggttatttttgtcatttttaccgttt 30242035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 15853801 - 15853877
Alignment:
Q  116 tgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||| |||||| |||| ||||| |||||| |  ||||||||||||||||||||||| ||||||||||||||    
T  15853801 tgtgatttgttaatttcttttgttacaagttatgtgtat--tttttacattttggttattgttgtcatttttaccgttt 15853877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 16036447 - 16036524
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||| |  ||||||||||||||||||||||| || |||| ||||||    
T  16036447 atgtgatttgttaatttcttttgttacaagtaatgtgtat--tttttacattttggttattgttgtcacttttgccgttt 16036524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 16051174 - 16051251
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||| |  ||||||||||||||||||||||| || |||| ||||||    
T  16051174 atgtgatttgttaatttcttttgttacaagtaatgtgtat--tttttacattttggttattgttgtcacttttgccgttt 16051251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 7368684 - 7368791
Alignment:
Q  48 tgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattt-tgtgatgtga--tttgttagtttcttgtgttgcaag 144  Q
    |||||| ||||| |||||||||||| |||||||| |||| ||||| ||| ||||||||| ||| ||||||||||  |||  |  |||||||| |||||||    
T  7368684 tgaatggttgatatgcaattttgtggtgaatatgtctctgatcatatgtgtgttttactgtttgtgtgatgtgaattttcattttttcttgttttgcaag 7368783  T
Q  145 taatgtgt 152  Q
    ||||||||    
T  7368784 taatgtgt 7368791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 18137159 - 18137220
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| |||| |||| | |||| ||||||||||||||||||| |||||||||    
T  18137159 ttgatatgtgacatggatgaatgatatacaatattgtgatgaatatgcctctgatcatgtgt 18137220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 23831636 - 23831526
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtga-tttgttagtttct 133  Q
    ||||||| |||||||||| | |||| | |||| |||||||||||||||||||  ||||||| || |||| || ||||  ||| ||| ||||| | |||||    
T  23831636 ttgatatgtgacatgaataaatgatatccaatcttgtgatgaatatgcctctggtcatgtgctttttttgctgtttttggatatgattttgtaaatttct 23831537  T
Q  134 tgtgttgcaag 144  Q
    ||| |||||||    
T  23831536 tgttttgcaag 23831526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 28166557 - 28166361
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttt-tactattttgtgatgtgatttgttagtttcttgtgttgcaagt 145  Q
    ||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||    
T  28166557 atgaatgattgatatgcaattttgtggtgaatatgtctctgatcatgtgtttgtttgtactatttt-taatgtgatttgttaatttcttgtgttgcaagt 28166459  T
Q  146 aatgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctatgctact 245  Q
    |||||||    |||||||||||||||||||||||   |||||||||||||||||||||| |||| || ||||||||||||||||||  |||||| |||||    
T  28166458 aatgtgtac--tttttacattttggttattgttgttgtttttaccgtttatctcgtatttctttgctaacttgttctatcattttatgccctattctact 28166361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 15476439 - 15476266
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||  |||||    
T  15476439 ttttgttcataatattttgatatatgatatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgttttttttactgtttt-agatgt 15476341  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||| ||||||||||||||| |||||||||||||||  |||||||||| || |||||| | |||||| |||||||    
T  15476340 gattttttagtttcttgtgtttcaagtaatgtgtttc-cttttacatttcggctattgtcgtcattttcaccgttt 15476266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 9096009 - 9095836
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  9096009 ttttgttcataatattttgatatatgatatgattgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 9095911  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||| |||||||||||||||  ||||||||||||| | |||||| ||| || |||||| | |||||| |||||||    
T  9095910 gattttttagtttcttgtgttttaagtaatgtgttt-tcttttacgtttcggctattgtcgtcattttcaccgttt 9095836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 10930384 - 10930211
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  10930384 ttttgttcataatattttgatatatgatatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 10930286  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||| ||||||||||||||| |||| ||||||||||  |||||| ||| || |||||| | |||||| |||||||    
T  10930285 gattttttagtttcttgtgtttcaagcaatgtgtttc-cttttacgtttcggctattgtcgtcattttcaccgttt 10930211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 19628370 - 19628197
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| | ||||||| |||||||||||| |||||||||  ||  |  |||  ||  |||||| |||| ||||||    
T  19628370 ttttgttcataatattttgatatatgacatggacgattgatatgcaattttgtgttgaatatgctactgtttgtgtaattactttactgtttt-tgatgt 19628272  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||||||||||  |||||| ||| |||| |||| |  ||||||||||||||| ||||||||||||||    
T  19628271 gatttgttagtttcttgtgtcacaagtattgtatttc-ttttcatgttttggttattgttgtcatttttaccgttt 19628197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 23012241 - 23012142
Alignment:
Q  92 tgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccg 191  Q
    ||||||||||||||| ||||   ||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  23012241 tgtgtttgttttactgtttta--atgtgatttgttaatttcttttgttacaagtaatgtgttt-ttttttacattttggttattgttgtcatttttaccg 23012145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 18922135 - 18922300
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  18922135 ttttgttcataatatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 18922233  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  18922234 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 18922300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 29942176 - 29942341
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  29942176 ttttgttcataaaatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 29942274  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  29942275 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 29942341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 29991330 - 29991495
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  29991330 ttttgttcataaaatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 29991428  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  29991429 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 29991495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 14142186 - 14142106
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgt-ttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  14142186 atgtgatttgttaatttcttttgttacaagtaatgtgtatttttttttacattttggttattgttgtcatttttaccgttt 14142106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 16615407 - 16615242
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  16615407 ttttgttcataatatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 16615309  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| ||||||| |||||| | ||||||    
T  16615308 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggatattgtcgtcatttt 16615242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 22051453 - 22051618
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  22051453 ttttgttcataatatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 22051551  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| ||||||| |||||| | ||||||    
T  22051552 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggatattgtcgtcatttt 22051618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 18525405 - 18525553
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgc 141  Q
    ||||||||| ||||| || ||||||||  || |||||||||  ||  |  |||| |||||||||| ||||   ||||||||||||| |||||| |||| |    
T  18525405 atgacatgagtgattaatatgcaatttcatgttgaatatgctactggttgtgtgattgttttactgtttta--atgtgatttgttaatttcttttgttac 18525502  T
Q  142 aagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||| |  ||||||||||||||||||||||| ||||||||||||||    
T  18525503 aagtaatgtgtat--tttttacattttggttattgttgtcatttttaccgttt 18525553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 1986144 - 1986067
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||  |  ||||||||||||||||||||||| ||||||||||||||    
T  1986144 atgtgatttgttaatttcttttgttacaagtaatgtgcat--tttttacattttggttattgttgtcatttttaccgttt 1986067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 19364593 - 19364475
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattt-tgtgatgtgatttgttagtttct 133  Q
    |||| ||||||  ||||||||| || ||||||||  | ||||||||| |||| ||||| ||| ||||||||| ||| |||||||||| || | | |||||    
T  19364593 ttgacatatgatgtgaatgattaatatgcaatttcataatgaatatgtctctgatcatatgtgtgttttactgtttgtgtgatgtgaattttcattttct 19364494  T
Q  134 tgtgttgcaagtaatgtgt 152  Q
    ||| |||||||||||||||    
T  19364493 tgttttgcaagtaatgtgt 19364475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 4716696 - 4716757
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  4716696 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 4716757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 4731876 - 4731937
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  4731876 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 4731937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 6212145 - 6212206
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  6212145 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 6212206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 18325737 - 18325798
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  18325737 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 18325798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 18340836 - 18340897
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  18340836 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 18340897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 32964788 - 32964727
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  32964788 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 32964727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 19088714 - 19088785
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttact 106  Q
    |||| |||||| ||||||||||||| ||||||||  ||||||||||| |||| ||||| ||| |||||||||    
T  19088714 ttgacatatgatatgaatgattgatatgcaatttcatgatgaatatgtctctgatcatatgtgtgttttact 19088785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 6187378 - 6187439
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| |||| |||||||||||||| |||||||||    
T  6187378 ttgatatgtgacatggatgattgatatacaatattgtaatgaatatgcctctgatcatgtgt 6187439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 4653745 - 4653822
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| ||||||| |||| | ||||   |||||||||||||||||  |||||||||||||    
T  4653745 atgtgatttgttaatttcttttgttacaagtaacgtgtatattttg--cattttggttattgttgttatttttaccgttt 4653822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 17787193 - 17787264
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttact 106  Q
    |||| |||||| ||||||||||||| ||||||||  ||||||||||  |||| ||||| ||| |||||||||    
T  17787193 ttgacatatgatatgaatgattgatatgcaatttcatgatgaatatatctctgatcatatgtgtgttttact 17787264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 15364745 - 15364689
Alignment:
Q  50 aatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttact 106  Q
    |||||||||| ||||||||  ||||||||||| |||| ||||| ||| |||||||||    
T  15364745 aatgattgatatgcaatttcatgatgaatatgtctctgatcatatgtgtgttttact 15364689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 9193369 - 9193187
Alignment:
Q  47 atgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagta 146  Q
    ||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  9193369 atgaatgattgatatgcaattttatgatggatatgcctctgatcatgtgtttgttttact-gtttatgatgtgatttgttagtttcttgtgttgcaagta 9193271  T
Q  147 atgtgtttcttttttacattttggttattgttgacatttttaccg-tttatctcgtattcctttcctcacttgttctatcatttta 231  Q
    |||||  | ||||||||||||| ||||||||||   ||||||||| ||| ||||||||| |||| || ||||||||||||||||||    
T  9193270 atgtg--tattttttacatttttgttattgttgtagtttttaccgttttgtctcgtatttctttgcttacttgttctatcatttta 9193187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 20456133 - 20456298
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || |||||||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  20456133 ttttgttcataatattttgatatatgacatgagtgattaatatgcaatcttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 20456231  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||||||||| ||||||||||| |||||||||||||||  ||||  |||||||||||||| | ||||||    
T  20456232 gatttgttaatttcttgtgtttcaagtaatgtgtttc-cttttgtattttggttattgtcgtcatttt 20456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 20541381 - 20541546
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || |||||||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  20541381 ttttgttcataatattttgatatatgacatgagtgattaatatgcaatcttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 20541479  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||||||||| ||||||||||| |||||||||||||||  ||||  |||||||||||||| | ||||||    
T  20541480 gatttgttaatttcttgtgtttcaagtaatgtgtttc-cttttgtattttggttattgtcgtcatttt 20541546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 15816825 - 15816658
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||  |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  15816825 ttttgttcataatattttgatatatgctatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 15816727  T
Q  119 ga--tttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||  ||| ||||||||| ||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  15816726 gattttttttagtttctcgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 15816658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 31448125 - 31447953
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| ||||||||| |||||||||||| |||||||||  ||  |  |||  ||  |||||| |||  ||||||    
T  31448125 ttttgttcataatattttgatatatgacatggatgattgatatgcaattttgtgttgaatatgctactgtttgtgtaattactttactgttt--tgatgt 31448028  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  ||||||| ||||||| ||||||||||||||    
T  31448027 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggtcattgttgtcatttttaccgttt 31447953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 16230233 - 16230398
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  16230233 ttttgttcataatatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 16230331  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||| ||  ||||| |||||||||||||| | ||||||    
T  16230332 gttttgttagtttcttgtgtttcaagtaatgtgtatc-attttatattttggttattgtcgtcatttt 16230398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 47663503 - 47663394
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtga-tttgttagtttct 133  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| ||||||||| | |||| || ||||  ||||||| ||||| | |||||    
T  47663503 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgtcttttttgctgtttttggatgtgattttgtaaatttct 47663404  T
Q  134 tgtgttgcaa 143  Q
    ||| ||||||    
T  47663403 tgttttgcaa 47663394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 5137195 - 5137286
Alignment:
Q  20 tttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactatttt 111  Q
    |||||||||||  | ||||||||||  ||||   ||| || |||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  5137195 tttgttcataatgttttgatatatggtatgagaaattaatatgcaatcttgtgatgaatatgcctctaatcatgtgtttgttttgctatttt 5137286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 11570 - 11397
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  11570 ttttgttcataatattttgatatatgatatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 11472  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||| ||||||||||||||| |||||||||||||||  |||||| ||| || |||||| | |||||| |||||||    
T  11471 gattttttagtttcttgtgtttcaagtaatgtgtttc-cttttacgtttcggctattgtcgtcattttcaccgttt 11397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 22336 - 22523
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttt-tactattttgtgatgtgatttgttagtttcttgtgttg 140  Q
    |||| ||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||||| |||| |||| |||||||||||| || ||||||||||||    
T  22336 atgatatgaatgattgatatgcaatttcgtggtgaatatgtctctgatcatgtgtttgtttgtactgtttt-tgatgtgatttgctaatttcttgtgttg 22434  T
Q  141 caagtaatgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcatttta 231  Q
    |||||||||||  |  |||||||||||||||||||||||    ||||||||||||||||||||| |||| || ||||||||||||||||||    
T  22435 caagtaatgtg--tactttttacattttggttattgttgttgcttttaccgtttatctcgtatttctttgcttacttgttctatcatttta 22523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26074 - 26239
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  26074 ttttgttcataatattttgatatatgatatgagtgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 26172  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||||| ||||||||| ||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  26173 gattttttagtttctcgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 26239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 245
Target Start/End: Complemental strand, 14240453 - 14240298
Alignment:
Q  88 atcatgtgtttgttt-tactattttgtgatgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||   ||||    
T  14240453 atcatgtgtttgtttgtactgtttt-tgatgtgatttgttaatttcttgtgttgcaagtaatgtgtac--tttttacattttggttattgttgttgtttt 14240357  T
Q  187 taccgtttatctcgtattcctttcctcacttgttctatcattttacaccctatgctact 245  Q
    |||||||||||||||||| |||| || ||||||||||||||||||  |||||| |||||    
T  14240356 taccgtttatctcgtatttctttgcttacttgttctatcattttatgccctattctact 14240298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 15386807 - 15386972
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| |||| ||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||  |||||    
T  15386807 ttttgttcataatatgttgatatatgatatgagtgattaatgtgcaatcttgtgatgaatatgcctctgatcatgtgtttattttactgtttt-agatgt 15386905  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    ||||||||| ||||||||||| |||| ||||||||||  ||||  |||||||||||||| | ||||||    
T  15386906 gatttgttaatttcttgtgtttcaaggaatgtgtttc-cttttgtattttggttattgtcgtcatttt 15386972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 12785148 - 12785283
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    ||||| |||||| || ||||||||||| |||| ||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| ||||  ||| |    
T  12785148 ttttgatcataatattttgatatatgatatgagtgattaatatgcaatcttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatat 12785246  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttc 155  Q
    ||||||||| ||||||||||| ||||||| |||||||    
T  12785247 gatttgttaatttcttgtgtttcaagtaacgtgtttc 12785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 15237820 - 15237993
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| ||||||||| |||||||||||| |||||||||  ||  |  |||| ||  ||||||||||| ||||||    
T  15237820 ttttgttcataatattttgatatatgacatggatgattgatatgcaattttgtgttgaatatgctactctttgtgtgattactttactatttt-tgatgt 15237918  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||||||||||  |||||| ||| |||| |||| |  ||||||| ||||||| ||||||||||||||    
T  15237919 gatttgttagtttcttgtgtcccaagtattgtatttc-ttttcatgttttggtcattgttgtcatttttaccgttt 15237993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 17094561 - 17094734
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| | ||||||| |||||||||||| |||||||||  ||  | ||||  ||  |||||| |||| ||||||    
T  17094561 ttttgttcataatattttgatatatgacatggacgattgatatgcaattttgtgttgaatatgctactgtttatgtaattactttactgtttt-tgatgt 17094659  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  ||||||||||||||| ||||||||||||||    
T  17094660 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggttattgttgtcatttttaccgttt 17094734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 15219064 - 15219237
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| ||||||||| |||||||||||| |||||||||  ||  |  |||| ||  || ||| |||| ||||||    
T  15219064 ttttgttcataatattttgatatatgacatggatgattgatatgcaattttgtgttgaatatgctactgtttgtgtgattacttcactgtttt-tgatgt 15219162  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  ||||||| ||||||| ||||||||||||||    
T  15219163 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggtcattgttgtcatttttaccgttt 15219237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 18465695 - 18465530
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  18465695 ttttgttcataatatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 18465597  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  18465596 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 18465530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 15082229 - 15082102
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattt-tgtgatgtgatttgttagtttct 133  Q
    |||| |||||| ||||||||||||| ||||||||  ||||||||||| |||| ||||| ||| ||||||||| ||| |||||||||| || | | |||||    
T  15082229 ttgacatatgatatgaatgattgatatgcaatttcatgatgaatatgtctctgatcatatgtgtgttttactgtttgtgtgatgtgaattttcattttct 15082130  T
Q  134 tgtgttgcaagtaatgtgtttctttttt 161  Q
    ||| ||||||||||||||| | ||||||    
T  15082129 tgttttgcaagtaatgtgtgtttttttt 15082102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 1895348 - 1895496
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgc 141  Q
    |||| |||| |||||||| ||||||||  || |||||||||  || ||  |||| |||||||||| ||||   ||||||||||||| |||||| |||| |    
T  1895348 atgatatgagtgattgatatgcaatttcatgttgaatatgctactgattgtgtgattgttttactgtttta--atgtgatttgttaatttcttttgttac 1895445  T
Q  142 aagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||| |||| | ||||  ||||||||||||||||||  |||||||||||||    
T  1895446 aagtaacgtgtatatttt--acattttggttattgttgttatttttaccgttt 1895496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 15651998 - 15651850
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgc 141  Q
    |||| |||| ||||| || ||||||||  || |||||||||  || ||  |||| |||||||||| ||||   ||||||||||||| |||||| |||| |    
T  15651998 atgatatgagtgattaatatgcaatttcatgttgaatatgctactgattgtgtgattgttttactgtttta--atgtgatttgttaatttcttttgttac 15651901  T
Q  142 aagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||| |||| | ||||  ||||||||||||||||||  |||||||||||||    
T  15651900 aagtaacgtgtatatttt--acattttggttattgttgttatttttaccgttt 15651850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 5316679 - 5316740
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  5316679 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 5316740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 16245501 - 16245365
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgc 141  Q
    |||| ||||||| || || ||||||||  || |||||||||  || ||  |||| |||||||||| ||||   ||||||||||||| |||||| |||| |    
T  16245501 atgatatgaatggttaatatgcaatttcatgttgaatatgctactgattgtgtgattgttttactgttttt--atgtgatttgttaatttcttttgttac 16245404  T
Q  142 aagtaatgtgtttcttttttac-attttggttattgttg 179  Q
    |||||| |||| | |||||||| ||||||||||||||||    
T  16245403 aagtaacgtgtattttttttactattttggttattgttg 16245365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 1910227 - 1910304
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| ||||||| |||| | ||||  ||||||||||||||||||  | |||||||||||    
T  1910227 atgtgatttgttaatttcttttgttacaagtaacgtgtatatttt--acattttggttattgttgttaattttaccgttt 1910304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 17086409 - 17086471
Alignment:
Q  18 attttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatat 80  Q
    ||||| ||||||| || ||| |||||||  |||||||||||||||||||||  ||||||||||    
T  17086409 attttcttcataaaattttggtatatgatgtgaatgattgatgtgcaatttcatgatgaatat 17086471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 37295309 - 37295127
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||    
T  37295309 ttttgttcataatattttgatatatgatatgaatgattgatatgcaattttgtgatgaatatgcctctgatcatgtgtttgttttactgtttt-agatgt 37295211  T
Q  119 gattt----------------gttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    |||||                 ||||||||||||||| ||||||||||||||| |||||| |||||||||||||| | ||||||    
T  37295210 gatttttttttttttttttagtttagtttcttgtgtttcaagtaatgtgtttcctttttatattttggttattgtcgtcatttt 37295127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 20580615 - 20580428
Alignment:
Q  48 tgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgtt-ttactattttgtgatgtgatttgttagtttcttgtgttgcaagta 146  Q
    |||||||||||| ||| |||||||||||||||||||||| || ||||||||||| | |||  ||| |||| |||||||||| ||||||||| |  || ||    
T  20580615 tgaatgattgatatgctattttgtgatgaatatgcctctgattatgtgtttgttataactgattt-tgatatgatttgttaatttcttgtgctataaata 20580517  T
Q  147 atgtgtttcttttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacacc 235  Q
    ||||| ||||||||||  |||||||||| ||||| ||||||||| ||||||||| | || ||| |||| |||||||||  |||||||||    
T  20580516 atgtgattcttttttaggttttggttatcgttgatatttttaccatttatctcgcactcttttgctcatttgttctattgttttacacc 20580428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 24612778 - 24612605
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| | ||||||| |||||||||||| |||||||||  ||  |  |||  ||  |||||| |||| ||||||    
T  24612778 ttttgttcataatattttgatatatgacatggacgattgatatgcaattttgtgttgaatatgctactgtttgtgtaattactttactgtttt-tgatgt 24612680  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  |||||||| |||||| ||||||||||||||    
T  24612679 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggttcttgttgtcatttttaccgttt 24612605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 24672403 - 24672230
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| | ||||||| |||||||||||| |||||||||  ||  |  |||  ||  |||||| |||| ||||||    
T  24672403 ttttgttcataatattttgatatatgacatggacgattgatatgcaattttgtgttgaatatgctactgtttgtgtaattactttactgtttt-tgatgt 24672305  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  |||||||| |||||| ||||||||||||||    
T  24672304 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggttcttgttgtcatttttaccgttt 24672230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 24709180 - 24709007
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| | ||||||| |||||||||||| |||||||||  ||  |  |||  ||  |||||| |||| ||||||    
T  24709180 ttttgttcataatattttgatatatgacatggacgattgatatgcaattttgtgttgaatatgctactgtttgtgtaattactttactgtttt-tgatgt 24709082  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  |||||||| |||||| ||||||||||||||    
T  24709081 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggttcttgttgtcatttttaccgttt 24709007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 24742174 - 24742001
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| | ||||||| |||||||||||| |||||||||  ||  |  |||  ||  |||||| |||| ||||||    
T  24742174 ttttgttcataatattttgatatatgacatggacgattgatatgcaattttgtgttgaatatgctactgtttgtgtaattactttactgtttt-tgatgt 24742076  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  |||||||| |||||| ||||||||||||||    
T  24742075 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggttcttgttgtcatttttaccgttt 24742001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 24754943 - 24754770
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || ||||||||||||||| | ||||||| |||||||||||| |||||||||  ||  |  |||  ||  |||||| |||| ||||||    
T  24754943 ttttgttcataatattttgatatatgacatggacgattgatatgcaattttgtgctgaatatgctactgtttgtgtaattactttactgtttt-tgatgt 24754845  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||||||||||| ||||||| ||| |||| |||| |  |||||||| |||||| ||||||||||||||    
T  24754844 gatttgttagtttcttgtgtcgcaagtattgtatttc-ttttcatgttttggttcttgttgtcatttttaccgttt 24754770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 21500785 - 21500950
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| ||||||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  21500785 ttttgttcataatatcttgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 21500883  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||||    
T  21500884 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattttggttattgtcgtcatttt 21500950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 19864345 - 19864180
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgt 118  Q
    |||||||||||| || |||||  |||  |||| ||||| || |||||| |||||||||||||||  || ||||| || |||| ||||| |||| | || |    
T  19864345 ttttgttcataatatattgatccatggtatgagtgattaatatgcaatcttgtgatgaatatgctactgatcatatgcttgtgttactgtttt-taatat 19864247  T
Q  119 gatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttt 186  Q
    | ||||||||||||||||||| |||||||||||||||  ||||| ||| |||||||||| | ||||||    
T  19864246 gttttgttagtttcttgtgtttcaagtaatgtgtttc-cttttatattctggttattgtcgtcatttt 19864180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 25210342 - 25210433
Alignment:
Q  20 tttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactatttt 111  Q
    |||||||||||  | ||||||||||  ||||   ||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  25210342 tttgttcataatgttttgatatatggtatgagaaattaatatgcaatcttgtgatgaatatgcctctaatcatgtgtttgttttactatttt 25210433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 25274497 - 25274588
Alignment:
Q  20 tttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactatttt 111  Q
    |||||||||||  | ||||||||||  ||||   ||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  25274497 tttgttcataatgttttgatatatggtatgagaaattaatatgcaatcttgtgatgaatatgcctctaatcatgtgtttgttttactatttt 25274588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 28898829 - 28898728
Alignment:
Q  92 tgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccg 191  Q
    |||| |||||||||| |||| |||||||||||| | ||| ||||| ||||||||| |||||||| | ||||||| ||||||| ||| ||| |||||||||    
T  28898829 tgtgattgttttactgttttttgatgtgatttgcttgttccttgtattgcaagtagtgtgtttc-tctttacatgttggttactgtcgacgtttttaccg 28898731  T
Q  192 ttt 194  Q
    |||    
T  28898730 ttt 28898728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 28935224 - 28935123
Alignment:
Q  92 tgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccg 191  Q
    |||| |||||||||| |||| |||||||||||| | ||| ||||| ||||||||| |||||||| | ||||||| ||||||| ||| ||| |||||||||    
T  28935224 tgtgattgttttactgttttttgatgtgatttgcttgttccttgtattgcaagtagtgtgtttc-tctttacatgttggttactgtcgacgtttttaccg 28935126  T
Q  192 ttt 194  Q
    |||    
T  28935125 ttt 28935123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 25194932 - 25195023
Alignment:
Q  20 tttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactatttt 111  Q
    |||||||||||  | ||||||||||  ||||   ||| || |||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  25194932 tttgttcataatgttttgatatatggtatgagaaattaatatgcaatcttgtgatgaatatgcctctaatcatgtgtttgttttgctatttt 25195023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 22989094 - 22989033
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  22989094 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 22989033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 23004161 - 23004100
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgt 96  Q
    ||||||| ||||||| ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  23004161 ttgatatgtgacatggatgattgatatacaatattgtgatgaatatgcctctgatcatgtgt 23004100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 125720 - 125808
Alignment:
Q  157 tttttacattttggttattgttgacatttttaccgtttatctcgtattcctttcctcacttgttctatcattttacaccctatgctact 245  Q
    |||||||||||||||||||||||   |||||||||||||||||||||| |||| || ||||||||||||||||||  |||||| |||||    
T  125720 tttttacattttggttattgttgttgtttttaccgtttatctcgtatttctttgcttacttgttctatcattttatgccctattctact 125808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 125648 - 125705
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttg 99  Q
    |||| ||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||    
T  125648 atgatatgaatgattgatatgcaatttcgtggtgaatatgtctctaatcatgtgtttg 125705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 7850 - 7772
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  7850 atgtgatttgttaatttcttttgttacaagtaatgtgtat-ttttttacattttggttattgttgtcatttttaccgttt 7772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 76685 - 76763
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  76685 atgtgatttgttaatttcttttgttacaagtaatgtgtat-ttttttacattttggttattgttgtcatttttaccgttt 76763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 6498 - 6616
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattt-tgtgatgtgatttgttagtttct 133  Q
    |||| |||||| ||||||||||||| ||||||||  ||||||||||| |||| ||||| ||| ||||||||| ||| |||||||||| || | | |||||    
T  6498 ttgacatatgatatgaatgattgatatgcaatttcatgatgaatatgtctctgatcatatgtgtgttttactgtttgtgtgatgtgaattttcattttct 6597  T
Q  134 tgtgttgcaagtaatgtgt 152  Q
    ||| |||||||||||||||    
T  6598 tgttttgcaagtaatgtgt 6616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 22306 - 22382
Alignment:
Q  116 tgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||| |||||| |||| ||||| |||||| |  ||||||||||||||||||||||| ||||||||||||||    
T  22306 tgtgatttgttaatttcttttgttacaagttatgtgtat--tttttacattttggttattgttgtcatttttaccgttt 22382  T

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Target: scaffold0078 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 50538 - 50462
Alignment:
Q  116 tgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||||||||| |||||| |||| ||||| |||||| |  ||||||||||||||||||||||| ||||||||||||||    
T  50538 tgtgatttgttaatttcttttgttacaagttatgtgtat--tttttacattttggttattgttgtcatttttaccgttt 50462  T

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Target: scaffold0049 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 37428 - 37491
Alignment:
Q  19 ttttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgc 82  Q
    |||||||||||| || ||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  37428 ttttgttcataatattttgatatatgacatggatgattgatatgcaattttgtgttgaatatgc 37491  T

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Target: scaffold0954 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 2393 - 2542
Alignment:
Q  42 atgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttactattttgtgatgtgatttgttagtttcttgtgttgc 141  Q
    |||| |||| ||||| || ||||||||  || |||||||||  || ||  |||| |||||||||| ||||   ||||||||||||| |||||| |||| |    
T  2393 atgatatgagtgattaatatgcaatttcatgttgaatatgctactgattgtgtgattgttttactgtttta--atgtgatttgttaatttcttttgttac 2490  T
Q  142 aagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    |||||| |||| | ||||| ||||||||||||||||||  |||||||||||||    
T  2491 aagtaacgtgtat-tttttgacattttggttattgttgttatttttaccgttt 2542  T

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Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 17095 - 17172
Alignment:
Q  115 atgtgatttgttagtttcttgtgttgcaagtaatgtgtttcttttttacattttggttattgttgacatttttaccgttt 194  Q
    ||||||||||||| |||||| |||| ||||| |||||| |  ||||||||||||||||||||||| | ||||||||||||    
T  17095 atgtgatttgttaatttcttttgttacaagttatgtgtat--tttttacattttggttattgttgtcctttttaccgttt 17172  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 55235 - 55175
Alignment:
Q  35 ttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtg 95  Q
    ||||||| |||||||||||| |||||   ||| |||||||||||||||||||  |||||||    
T  55235 ttgatatgtgacatgaatgaatgatgcctaatattgtgatgaatatgcctctggtcatgtg 55175  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 179508 - 179596
Alignment:
Q  18 attttgttcataacatcttgatatatgacatgaatgattgatgtgcaattttgtgatgaatatgcctcttatcatgtgtttgttttact 106  Q
    ||||| ||||||| || |||  ||||||  |||||||||||||||||||||  ||||||||||  |||| || || ||| |||||||||    
T  179508 attttcttcataaaattttggcatatgatgtgaatgattgatgtgcaatttcatgatgaatatatctctgattatatgtgtgttttact 179596  T

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