View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_150 (Length: 250)
Name: NF3772_low_150
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_150 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 41811179 - 41810957
Alignment:
| Q |
18 |
agttccatatatgaaacttatagaagatgataaacaaacaaagattactattataacttaatgtctactatagcaacgacatgtataggtagtttaaaac |
117 |
Q |
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| T |
41811179 |
agttccatatatgaaacttatagaagatgataaacaaacaaagattactattataacttaatgtctactatagcaacgacatgtataggtagtttaaaac |
41811080 |
T |
|
| Q |
118 |
taaccacactatgagttgtgacatatcacaaatccaatttgaccagatgaatttaatcaatcatctccaggcatgtatgtctcaataaatctataccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811079 |
taaccacactatgagttgtgacatatcacaaatccaatttgaccagatgaatttaatcgatcatctccaggcatgtatgtctcaataaatctataccaaa |
41810980 |
T |
|
| Q |
218 |
gcaagtaagcaacgatgatgatg |
240 |
Q |
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|||||||||||||||||| |||| |
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| T |
41810979 |
gcaagtaagcaacgatgaagatg |
41810957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 31769834 - 31770056
Alignment:
| Q |
18 |
agttccatatatgaaacttatagaagatgataaacaaacaaagattactattataacttaatgtctactatagcaacgacatgtataggtagtttaaaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769834 |
agttccatatatgaaacttatagaagatgataaacaaacaaagattactattataacttaatgtctactatagcaacgacatgtataggtagtttaaaac |
31769933 |
T |
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| Q |
118 |
taaccacactatgagttgtgacatatcacaaatccaatttgaccagatgaatttaatcaatcatctccaggcatgtatgtctcaataaatctataccaaa |
217 |
Q |
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| T |
31769934 |
taaccacaccatgagttgtgacatatcacaaatccaatttgatcagatgaatttaatcaatcatctccaggcatgtatgtctcaataaatctataccaaa |
31770033 |
T |
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| Q |
218 |
gcaagtaagcaacgatgatgatg |
240 |
Q |
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|||||||||||||||||| |||| |
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| T |
31770034 |
gcaagtaagcaacgatgaagatg |
31770056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 7607274 - 7607496
Alignment:
| Q |
18 |
agttccatatatgaaacttatagaagatgataaacaaacaaagattactattataacttaatgtctactatagcaacgacatgtataggtagtttaaaac |
117 |
Q |
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| T |
7607274 |
agttccatatatgaaacatatagaagatgataaacaaacaaagattactattataacttaatgtctaccatagcaacgacatgtataggtagtttaaaac |
7607373 |
T |
|
| Q |
118 |
taaccacactatgagttgtgacatatcacaaatccaatttgaccagatgaatttaatcaatcatctccaggcatgtatgtctcaataaatctataccaaa |
217 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7607374 |
taaccacactatgagttgtgacatatcacaaattcaatttgaccagatgaatttaatcaatcatctccaggcatgtatgtctcaataaatctataccaaa |
7607473 |
T |
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| Q |
218 |
gcaagtaagcaacgatgatgatg |
240 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
7607474 |
gcaagtaagcaacgatgaagatg |
7607496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 14185639 - 14185407
Alignment:
| Q |
18 |
agttccatatatgaaacttatagaagatgataaacaaacaaagatta--ctattataacttaatgtctactatagca----------------acgacat |
99 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||| |
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| T |
14185639 |
agttccatatatgaaacttttagaagatgataaacaaacaaagattaaactattataacttaatgtctactatatcattctttaaaactaatcacaacat |
14185540 |
T |
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| Q |
100 |
gtataggtagtttaaaactaaccacactatgagttgtgacatatcacaaatccaatttgaccagatgaatttaatcaatcatctccaggcatgtatgtct |
199 |
Q |
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| T |
14185539 |
gtataggtagtttaaaactaaccacactatgagttgtgacatatcacaaatccaatttgatcagatgaatttaatcaatcatctccagacatgtatgtct |
14185440 |
T |
|
| Q |
200 |
caataaatctataccaaagcaagtaagcaacga |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
14185439 |
caataaatctataccaaagcaagtaagcaacga |
14185407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 51385615 - 51385673
Alignment:
| Q |
128 |
atgagttgtgacatatcacaaatccaatttgaccagatgaatttaatcaatcatctcca |
186 |
Q |
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||||| ||||||||||| ||||||||||||| |||||||||||||| || || |||||| |
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| T |
51385615 |
atgagctgtgacatatctcaaatccaatttggccagatgaatttaaccattcttctcca |
51385673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 16360501 - 16360453
Alignment:
| Q |
125 |
actatgagttgtgacatatcacaaatccaatttgaccagatgaatttaa |
173 |
Q |
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||||||||||||||||| ||| |||||||||||| ||||||||||||| |
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| T |
16360501 |
actatgagttgtgacatgtcataaatccaatttggtcagatgaatttaa |
16360453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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