View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_153 (Length: 250)

Name: NF3772_low_153
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_153
NF3772_low_153
[»] chr1 (13 HSPs)
chr1 (18-250)||(38731393-38731625)
chr1 (18-73)||(29169884-29169939)
chr1 (6-84)||(21472953-21473031)
chr1 (6-53)||(42919841-42919888)
chr1 (18-64)||(4862080-4862126)
chr1 (18-76)||(20259888-20259946)
chr1 (26-95)||(50314723-50314791)
chr1 (25-76)||(35387754-35387805)
chr1 (23-98)||(48841178-48841253)
chr1 (6-84)||(24177590-24177668)
chr1 (6-84)||(28041206-28041284)
chr1 (12-84)||(7213200-7213272)
chr1 (131-171)||(35991364-35991404)
[»] chr7 (13 HSPs)
chr7 (18-109)||(43856799-43856890)
chr7 (18-98)||(27521407-27521487)
chr7 (6-98)||(28517366-28517458)
chr7 (18-84)||(10905068-10905134)
chr7 (18-84)||(19277243-19277309)
chr7 (6-98)||(45613921-45614013)
chr7 (18-117)||(4501176-4501275)
chr7 (18-76)||(9281222-9281285)
chr7 (18-76)||(9292193-9292256)
chr7 (18-53)||(10032262-10032297)
chr7 (6-84)||(21326917-21326995)
chr7 (24-84)||(982899-982959)
chr7 (6-98)||(48539117-48539209)
[»] chr6 (6 HSPs)
chr6 (29-97)||(24016274-24016342)
chr6 (6-84)||(29338158-29338236)
chr6 (18-83)||(28009078-28009143)
chr6 (6-53)||(45756-45803)
chr6 (137-175)||(34168764-34168802)
chr6 (18-66)||(4206687-4206735)
[»] chr2 (14 HSPs)
chr2 (18-97)||(16351935-16352014)
chr2 (25-84)||(5532370-5532429)
chr2 (6-84)||(13413301-13413379)
chr2 (17-98)||(17344574-17344655)
chr2 (6-98)||(41867987-41868079)
chr2 (11-117)||(13147184-13147290)
chr2 (29-114)||(3262244-3262329)
chr2 (11-62)||(34814902-34814953)
chr2 (23-114)||(19161879-19161970)
chr2 (11-66)||(32029170-32029225)
chr2 (6-84)||(4413145-4413223)
chr2 (14-47)||(11921297-11921330)
chr2 (137-174)||(30602333-30602370)
chr2 (24-53)||(44684955-44684984)
[»] chr3 (18 HSPs)
chr3 (12-73)||(26856847-26856908)
chr3 (18-98)||(53785645-53785725)
chr3 (23-73)||(52411987-52412037)
chr3 (25-110)||(46940871-46940956)
chr3 (18-97)||(7502103-7502180)
chr3 (6-53)||(21552649-21552696)
chr3 (17-84)||(32546745-32546812)
chr3 (26-117)||(38145973-38146064)
chr3 (18-84)||(37992283-37992348)
chr3 (18-84)||(39583320-39583386)
chr3 (11-84)||(44786-44859)
chr3 (137-172)||(46940999-46941034)
chr3 (18-73)||(52741603-52741658)
chr3 (18-52)||(3443403-3443437)
chr3 (20-114)||(4472982-4473076)
chr3 (18-76)||(37133090-37133148)
chr3 (27-76)||(32690966-32691015)
chr3 (18-75)||(51234575-51234632)
[»] chr8 (14 HSPs)
chr8 (18-98)||(38815230-38815310)
chr8 (6-73)||(18804573-18804640)
chr8 (18-98)||(3821160-3821240)
chr8 (6-66)||(35740065-35740125)
chr8 (124-171)||(10556512-10556559)
chr8 (18-73)||(28196153-28196208)
chr8 (18-65)||(40223494-40223541)
chr8 (137-171)||(31565373-31565407)
chr8 (11-53)||(37514202-37514244)
chr8 (18-99)||(3187905-3187985)
chr8 (12-73)||(5329687-5329748)
chr8 (137-170)||(31150336-31150369)
chr8 (137-169)||(3863160-3863192)
chr8 (18-98)||(6592512-6592591)
[»] chr5 (7 HSPs)
chr5 (6-114)||(22188734-22188842)
chr5 (18-69)||(37873729-37873780)
chr5 (11-99)||(35310383-35310471)
chr5 (24-76)||(42921655-42921707)
chr5 (6-53)||(13166989-13167036)
chr5 (34-71)||(3114247-3114284)
chr5 (6-98)||(430538-430630)
[»] chr4 (19 HSPs)
chr4 (23-98)||(23255649-23255724)
chr4 (18-99)||(56462197-56462278)
chr4 (26-98)||(45661627-45661699)
chr4 (18-98)||(53098357-53098437)
chr4 (18-97)||(4419200-4419279)
chr4 (18-113)||(42455698-42455793)
chr4 (6-73)||(53170474-53170541)
chr4 (18-85)||(54190942-54191009)
chr4 (18-98)||(50464387-50464467)
chr4 (18-97)||(600783-600862)
chr4 (6-97)||(3329933-3330024)
chr4 (18-73)||(6865911-6865966)
chr4 (23-98)||(16955396-16955471)
chr4 (6-73)||(34107775-34107842)
chr4 (11-82)||(50463030-50463101)
chr4 (20-66)||(23233208-23233253)
chr4 (6-52)||(26521470-26521516)
chr4 (131-169)||(45761011-45761049)
chr4 (137-170)||(41945007-41945040)
[»] scaffold0490 (1 HSPs)
scaffold0490 (6-84)||(6284-6362)
[»] scaffold0224 (1 HSPs)
scaffold0224 (6-53)||(18443-18490)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-98)||(103042-103134)
[»] scaffold0119 (1 HSPs)
scaffold0119 (26-66)||(16074-16114)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 38731625 - 38731393
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgtcatctaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||    
T  38731625 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacgagatttgactttgtcatctaa 38731526  T
Q  118 cataaattgccctcttattttctattcatgtgtaattaatccttaatatatataaaatgaattcaatctatttattttgaaatgcctcacaaggttactt 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38731525 cataaattgccctcttactttctattcatgtgtaattaatccttaatatatataaaatgaattgaatctatttattttgaaatgcctcacaaggttactt 38731426  T
Q  218 attttaaaagggagggaatatattttaaggtat 250  Q
    |||||||||||||||||||||||||||||||||    
T  38731425 attttaaaagggagggaatatattttaaggtat 38731393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29169884 - 29169939
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||| ||||||    
T  29169884 tgttaaccttctacatagagttcaaaaggtcatgcacagcaatgtcatgtctccta 29169939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 21473031 - 21472953
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||||| |  ||||||||| |||||| || |||||||    
T  21473031 agcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaat 21472953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 42919888 - 42919841
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgca 53  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  42919888 agcagtagagattgttaaccttctacatagagtttaaagggtcatgca 42919841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 4862080 - 4862126
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtca 64  Q
    |||| ||||||||||||||||||||||||||||||| || |||||||    
T  4862080 tgttgaccttctacatagagttcaaagggtcatgcataacaatgtca 4862126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 20259888 - 20259946
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagt 76  Q
    |||| ||||||||||||||||||||| ||||||||| | |||||||||| ||| |||||    
T  20259888 tgttgaccttctacatagagttcaaaaggtcatgcatagtaatgtcatgtctcataagt 20259946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 50314723 - 50314791
Alignment:
Q  26 ttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttac 95  Q
    |||||||||||||||||||||| || | ||| ||||||||||||||| ||| |||||||| | |||||||    
T  50314723 ttctacatagagttcaaagggttatacgcaacaatgtcatgactcct-agtccatgaataatgtgtttac 50314791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 35387754 - 35387805
Alignment:
Q  25 cttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagt 76  Q
    |||||||||||||||||||||| |||||| |  ||||||||| |||||||||    
T  35387754 cttctacatagagttcaaagggacatgcatatcaatgtcatgtctcctaagt 35387805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 48841178 - 48841253
Alignment:
Q  23 accttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    ||||||||||||||||  |||| || ||||| |||||||| ||| ||||||| |  ||||||| ||||||||||||    
T  48841178 accttctacatagagtctaaagagttatgcataataatgttatgtctcctaaatctatgaatattatgtttacgag 48841253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 24177590 - 24177668
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||| ||||| |||||||||||||||||||||  |||||||| |  ||||||||  |||||| || |||||||    
T  24177590 agcatcagaggctgtttaccttctacatagagttcaaaaagtcatgcatagcaatgtcatatctcctaggtccatgaat 24177668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 28041206 - 28041284
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||| | ||| ||||||||||||||||||||| ||||||||| |  ||||||||| |  |||||| |||||||    
T  28041206 agcaccagaggcggttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtcctctaagtccatgaat 28041284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 7213272 - 7213200
Alignment:
Q  12 agagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||||||||| | ||||| |||| ||||||||  |||||||| |||||||||||| || ||| || |||||||    
T  7213272 agagactgttgagcttctgcataaagttcaaaatgtcatgcataataatgtcatgtcttctaggtccatgaat 7213200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 35991364 - 35991404
Alignment:
Q  131 cttattttctattcatgtgtaattaatccttaatatatata 171  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  35991364 cttattttctattcatatgtaattaattcttgatatatata 35991404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 43856890 - 43856799
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttg 109  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||  ||||||||||||| |||| ||||    
T  43856890 tgttgaccttctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgattttg 43856799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 27521487 - 27521407
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||||||||||||||||||| ||||||||| || ||||||||| |||||||||  ||||||  | ||||||||||    
T  27521487 tgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgag 27521407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 28517366 - 28517458
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||||| ||| |||||||||||||||| |||||||| ||||| || ||||| ||| ||||||||| |||||||  | ||||||||||    
T  28517366 agcatcagagacagttgaccttctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgag 28517458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 10905134 - 10905068
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| |||||||||||||||||||||| | |||||| || ||||||||| |||||| || |||||||    
T  10905134 tgttgaccttctacatagagttcaaagagccatgcataacaatgtcatgtctcctaggtccatgaat 10905068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 19277309 - 19277243
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||||||||||||||||||| ||||||||| |  ||||||||| |||||| || |||||||    
T  19277309 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaat 19277243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 45613921 - 45614013
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||| |||||| |||||||||||||||||||| | ||||||| || |||||||   |||||| || |||||||  | ||||||||||    
T  45613921 agcaccagaggctgttagccttctacatagagttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgag 45614013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 4501275 - 4501176
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgtcatctaa 117  Q
    |||| ||||||||||||||||||||| | ||||||| |  ||||||||| ||||||  | |||||||  | ||||||||||  ||  |||||||||||||    
T  4501275 tgttgaccttctacatagagttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaa 4501176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 9281222 - 9281285
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcat-----gcacaataatgtcatgactcctaagt 76  Q
    |||| ||||||||||||||||||||||||||||     |||||| ||||||||||||| |||||    
T  9281222 tgttgaccttctacatagagttcaaagggtcatgtacagcacaacaatgtcatgactcttaagt 9281285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 9292193 - 9292256
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcat-----gcacaataatgtcatgactcctaagt 76  Q
    |||| ||||||||||||||||||||||||||||     |||||| ||||||||||||| |||||    
T  9292193 tgttgaccttctacatagagttcaaagggtcatgtacagcacaacaatgtcatgactcttaagt 9292256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 10032262 - 10032297
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgca 53  Q
    |||||||||||||||||||||||||||| |||||||    
T  10032262 tgttaaccttctacatagagttcaaaggatcatgca 10032297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 21326917 - 21326995
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||| ||||| ||||| ||||||||||||||| ||||||||| |  ||||| ||| |||||| || |||||||    
T  21326917 agcaccagaggctgttgaccttttacatagagttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaat 21326995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 982959 - 982899
Alignment:
Q  24 ccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||||||||||||||||||| ||||||||| |  ||||||||| || ||| || |||||||    
T  982959 ccttctacatagagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaat 982899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 48539209 - 48539117
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||| ||||| | | |||||||||||| |||| ||||||||| |  ||||||||| |||||| || |||||||  | ||||||||||    
T  48539209 agcaccagaggctgttgatcgtctacatagagtccaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgag 48539117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 24016342 - 24016274
Alignment:
Q  29 tacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacga 97  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||    
T  24016342 tacatagagttcaaagggtcatgcacaagaatgtcatgtctcctaagtacataaatattatgtttacga 24016274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 29338158 - 29338236
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||||  ||| ||||||||||||  |||||||||||||||||||  |||||||||||||||| || |||||||    
T  29338158 agcaccagagatcgttgaccttctacatatggttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaat 29338236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 28009078 - 28009143
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaa 83  Q
    |||| |||||||  ||| ||||||||||||||| ||||| |||||||||||||||| || ||||||    
T  28009078 tgttgaccttctgtatatagttcaaagggtcatacacaacaatgtcatgactcctaggtccatgaa 28009143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 45756 - 45803
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgca 53  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||||    
T  45756 agcaccagaggctgttgaccttctacatagagttcaaaaggtcatgca 45803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 34168802 - 34168764
Alignment:
Q  137 ttctattcatgtgtaattaatccttaatatatataaaat 175  Q
    |||||||||||||||||||||| || |||||||||||||    
T  34168802 ttctattcatgtgtaattaatcatttatatatataaaat 34168764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 4206687 - 4206735
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatg 66  Q
    |||| ||||||||||||||||||||| |||||||||  | |||||||||    
T  4206687 tgttgaccttctacatagagttcaaaaggtcatgcatgacaatgtcatg 4206735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 16351935 - 16352014
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacga 97  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||| || ||||||||||| |||||||||||    
T  16351935 tgttgaccttctacatagagttcaaatggtcatgcacaacaatgtcatgtctcttaggtacatgaatattatgtttacga 16352014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 5532429 - 5532370
Alignment:
Q  25 cttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  5532429 cttctacatagagttcaaagggtcatgcacaacaatgccatgactcctaagttcatgaat 5532370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 13413379 - 13413301
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||||| || ||||||||| |||||| || |||||||    
T  13413379 agcagcagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaat 13413301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 17344655 - 17344574
Alignment:
Q  17 ctgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||||||||| |||||| || |||||||  | ||||||||||    
T  17344655 ctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgag 17344574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 41867987 - 41868079
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||||| || ||||||||| |||| | || |||||||  | ||||||||||    
T  41867987 agcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgag 41868079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 13147184 - 13147290
Alignment:
Q  11 cagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgt 110  Q
    |||||| |||| ||||||| |||| ||| ||||||||| ||||||| |||||| || || |||||| |||||||| | | ||||||| | |||| |||||    
T  13147184 cagagattgttgaccttcttcatatagtacaaagggtcgtgcacaacaatgtcttgtcttctaagttcatgaatattgtatttacgaaaattgattttgt 13147283  T
Q  111 catctaa 117  Q
    |||||||    
T  13147284 catctaa 13147290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 3262244 - 3262329
Alignment:
Q  29 tacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgtcatc 114  Q
    |||||||||||||||||||| ||||||  | ||||||||||| || || ||| |||| ||||||||||||| |||| |||| ||||    
T  3262244 tacatagagttcaaagggtcttgcacatcagtgtcatgactcataggtccataaatattatgtttacgagaattgattttgccatc 3262329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 34814902 - 34814953
Alignment:
Q  11 cagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgt 62  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| || |||||    
T  34814902 cagagactgttgaccttctacatagagttcaaatggtcatgcataacaatgt 34814953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 19161879 - 19161970
Alignment:
Q  23 accttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgtcatc 114  Q
    ||||| ||||||||||||||| ||||||||| |  ||||||||| |||||| ||  ||||||| | ||||| ||||  |||| |||||||||    
T  19161879 accttttacatagagttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcaatgaatagtgtgttttcgaggattgattttgtcatc 19161970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 32029170 - 32029225
Alignment:
Q  11 cagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatg 66  Q
    ||||| ||||| |||||||||||||||||||||| ||||| || || |||||||||    
T  32029170 cagaggctgttgaccttctacatagagttcaaagagtcatccataacaatgtcatg 32029225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 4413145 - 4413223
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| |||||| |||| ||||||||||||| ||||||| ||||||||| |  || |||||| |||||| || |||||||    
T  4413145 agcaccagagattgttgaccttctacatagggttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaat 4413223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 11921297 - 11921330
Alignment:
Q  14 agactgttaaccttctacatagagttcaaagggt 47  Q
    |||||||| |||||||||||||||||||||||||    
T  11921297 agactgttgaccttctacatagagttcaaagggt 11921330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 30602370 - 30602333
Alignment:
Q  137 ttctattcatgtgtaattaatccttaatatatataaaa 174  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  30602370 ttctattcatgtgtaattaatccttgatatataaaaaa 30602333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 44684955 - 44684984
Alignment:
Q  24 ccttctacatagagttcaaagggtcatgca 53  Q
    ||||||||||||||||||||||||||||||    
T  44684955 ccttctacatagagttcaaagggtcatgca 44684984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 26856847 - 26856908
Alignment:
Q  12 agagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||||||||| ||||||||||||||||||||||||||||||| |  ||||||||| ||||||    
T  26856847 agagactgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctccta 26856908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 53785725 - 53785645
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||||||||||||||||||| ||||||||| |  ||||||||| |||||| || |||||||  ||||||||||||    
T  53785725 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgag 53785645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 52411987 - 52412037
Alignment:
Q  23 accttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||||    
T  52411987 accttctacatagagttcaaagggtcatgcataacaatgtcatgtctccta 52412037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 46940871 - 46940956
Alignment:
Q  25 cttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgt 110  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||| || || |||||||  | ||||||||| | |||| |||||    
T  46940871 cttctacatagagttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacgaaaattgattttgt 46940956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 7502103 - 7502180
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacga 97  Q
    |||| ||||||||||  ||||| |||||||||||||||| ||||||||||||| ||  | |||||||| |||||||||||    
T  7502103 tgttgaccttctaca--gagtttaaagggtcatgcacaacaatgtcatgactcatagatccatgaatattatgtttacga 7502180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 21552696 - 21552649
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgca 53  Q
    |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  21552696 agcatcagagactgttgaccttctacatagagttcaaaaggtcatgca 21552649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 32546812 - 32546745
Alignment:
Q  17 ctgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    ||||| |||||||||||||||||||||  |||||||| | |||||||||| |||||| || |||||||    
T  32546812 ctgttgaccttctacatagagttcaaaaagtcatgcatagtaatgtcatgtctcctaggtccatgaat 32546745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 38146064 - 38145973
Alignment:
Q  26 ttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgtcatctaa 117  Q
    |||||| ||||||||||||||||||||| || ||||||||| |||||| || ||||||   | |||||||||   |||| ||||||||||||    
T  38146064 ttctacttagagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgattgattttgtcatctaa 38145973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 37992348 - 37992283
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||||| || || |||||||    
T  37992348 tgttgaccttctacaaagagttcaa-gggtcatgcacagtaatgtcatgactcgtacgtgcatgaat 37992283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 39583320 - 39583386
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||||| ||||||||||||||||||||||| |  ||||||||| |||||| || |||||||    
T  39583320 tgttgaccttctgcatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaat 39583386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 44859 - 44786
Alignment:
Q  11 cagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||| |  |||||||||  ||||| || |||||||    
T  44859 cagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaat 44786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 46940999 - 46941034
Alignment:
Q  137 ttctattcatgtgtaattaatccttaatatatataa 172  Q
    |||||||||||||||||||||| |||||||||||||    
T  46940999 ttctattcatgtgtaattaatcattaatatatataa 46941034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 52741603 - 52741658
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||| ||||||||||||||||||||| ||||||||| |  ||||||||| ||||||    
T  52741603 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctccta 52741658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 3443403 - 3443437
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgc 52  Q
    |||| ||||||||||||||||||||||||||||||    
T  3443403 tgttgaccttctacatagagttcaaagggtcatgc 3443437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 4473076 - 4472982
Alignment:
Q  20 ttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgtcatc 114  Q
    ||||||||||||||| |||||||||  ||||||| |  ||| ||||| |||||| ||  ||||||| | ||||||||||| |||  |||||||||    
T  4473076 ttaaccttctacataaagttcaaagaatcatgcatagcaatttcatgtctcctaggtctatgaatattgtgtttacgagaattggttttgtcatc 4472982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 37133090 - 37133148
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagt 76  Q
    |||| |||||||||||||||||| || ||||||||| |  ||||||||| |||||||||    
T  37133090 tgttgaccttctacatagagttctaaaggtcatgcatagcaatgtcatgtctcctaagt 37133148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 32690966 - 32691015
Alignment:
Q  27 tctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagt 76  Q
    ||||||||||||| |||| ||||||||||||||| | ||| |||||||||    
T  32690966 tctacatagagttaaaagagtcatgcacaataatattatgtctcctaagt 32691015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 51234632 - 51234575
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaag 75  Q
    |||| ||||||||||||||||||||| ||| ||||| || ||||| ||| ||||||||    
T  51234632 tgttgaccttctacatagagttcaaaaggttatgcataacaatgttatgtctcctaag 51234575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 38815310 - 38815230
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||||||||||||||||||||||||||||| |  ||||||||| |||||| || |||||||  | ||||||||||    
T  38815310 tgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgag 38815230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 18804640 - 18804573
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||| ||||| ||||| |||||||||||||| |||||| ||||||||| || ||||||||||||||||    
T  18804640 agcaccagaggctgttgaccttctacatagatttcaaaaggtcatgcataacaatgtcatgactccta 18804573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 3821240 - 3821160
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||||||||||||||||||||||| ||||| |  ||||||||| |||||| || ||| |||  ||||||||||||    
T  3821240 tgttgaccttctacatagagttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgttatgtttacgag 3821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 35740065 - 35740125
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatg 66  Q
    |||| |||||| |||| |||||||||||||||||||||  |||||||| || |||||||||    
T  35740065 agcaccagagattgttgaccttctacatagagttcaaaaagtcatgcataacaatgtcatg 35740125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 10556512 - 10556559
Alignment:
Q  124 ttgccctcttattttctattcatgtgtaattaatccttaatatatata 171  Q
    |||||| |||||||||| |||||||||||||||| ||| |||||||||    
T  10556512 ttgcccacttattttctgttcatgtgtaattaatactttatatatata 10556559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 28196208 - 28196153
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||| ||| ||||| ||||||||||||| |||||||||| ||||||||| ||||||    
T  28196208 tgttgaccatctacgtagagttcaaaggatcatgcacaacaatgtcatgtctccta 28196153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 40223494 - 40223541
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcat 65  Q
    |||| ||||||||||||||||||||| ||||||||| || ||||||||    
T  40223494 tgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcat 40223541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 31565407 - 31565373
Alignment:
Q  137 ttctattcatgtgtaattaatccttaatatatata 171  Q
    ||||||||||||||| |||||||||||||||||||    
T  31565407 ttctattcatgtgtagttaatccttaatatatata 31565373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 37514244 - 37514202
Alignment:
Q  11 cagagactgttaaccttctacatagagttcaaagggtcatgca 53  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||    
T  37514244 cagaggctgttgaccttctacatagagttcaaaaggtcatgca 37514202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 3187985 - 3187905
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgaga 99  Q
    |||||||||||||||||||| ||||||||| ||||| |  ||||| ||| |||||| || |||||||  | |||||||||||    
T  3187985 tgttaaccttctacatagag-tcaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgaga 3187905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 5329687 - 5329748
Alignment:
Q  12 agagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    ||||| |||| ||||||| ||| ||||||||||||||||| |||| ||| ||||| ||||||    
T  5329687 agagattgttgaccttctgcattgagttcaaagggtcatggacaacaatatcatgtctccta 5329748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 31150336 - 31150369
Alignment:
Q  137 ttctattcatgtgtaattaatccttaatatatat 170  Q
    ||||||||||||||||||||||||| ||||||||    
T  31150336 ttctattcatgtgtaattaatccttgatatatat 31150369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 3863192 - 3863160
Alignment:
Q  137 ttctattcatgtgtaattaatccttaatatata 169  Q
    ||||||||||||||||||||||||| |||||||    
T  3863192 ttctattcatgtgtaattaatccttgatatata 3863160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 6592591 - 6592512
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||||| ||||||||||||| |||||||||  ||||||||||| ||| || || |||||||  | ||||||||||    
T  6592591 tgttgaccttctgcatagagttcaaaaggtcatgca-tataatgtcatgtctcataggttcatgaatgttgtgtttacgag 6592512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 22188734 - 22188842
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgac 105  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||||| || ||| ||||| ||||||  | |||||||  | ||||||||||| |||      
T  22188734 agcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaatgttgtgtttacgagaattggt 22188833  T
Q  106 tttgtcatc 114  Q
    |||||||||    
T  22188834 tttgtcatc 22188842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37873729 - 37873780
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgact 69  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||||||    
T  37873729 tgttgaccttctacatagagttcaaagggtcatgcagaacaatgtcatgact 37873780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 35310471 - 35310383
Alignment:
Q  11 cagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgaga 99  Q
    ||||| |||||||||||||||||||||| ||||||||  |||| |  ||||| ||| |||||| || |||||||  | |||||||||||    
T  35310471 cagaggctgttaaccttctacatagagtccaaagggttttgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgaga 35310383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 42921707 - 42921655
Alignment:
Q  24 ccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagt 76  Q
    |||||||||||||||||| | ||||||||| || ||||||||| |||||||||    
T  42921707 ccttctacatagagttcagaaggtcatgcataacaatgtcatgtctcctaagt 42921655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 13166989 - 13167036
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgca 53  Q
    |||| ||||||||||| |||||||||||||||| |||||||| |||||    
T  13166989 agcatcagagactgttgaccttctacatagagtccaaagggttatgca 13167036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 3114247 - 3114284
Alignment:
Q  34 agagttcaaagggtcatgcacaataatgtcatgactcc 71  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  3114247 agagttcaaagggtcatgcacaacaatgtcataactcc 3114284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 430630 - 430538
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||| | ||| |||||||||||||| | |||||||| ||||| | |||||| ||| |||||| || |||||||  | ||||||||||    
T  430630 agcatcagaggcagttgaccttctacatagattccaaagggttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgag 430538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 23255724 - 23255649
Alignment:
Q  23 accttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||||||||||||||| |||||||| ||||| || ||||| ||| ||||||||| |||||||| | ||||||||||    
T  23255724 accttctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgag 23255649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 56462197 - 56462278
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgaga 99  Q
    |||| ||||||||||||||||||||||| |||||||  | ||||||||| ||||||||| ||| |||  | |||||||||||    
T  56462197 tgttgaccttctacatagagttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgaga 56462278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 45661699 - 45661627
Alignment:
Q  26 ttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    ||||||||| ||||||||||||||| ||||| |||||||| |||| || || |||||||| | ||||||||||    
T  45661699 ttctacataaagttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgag 45661627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 53098437 - 53098357
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||||||||||||||||||||||||| |||||||| ||  |||||| |||||  || || || ||||||| ||||||||||    
T  53098437 tgttaaccttctacatagagttcaaatggtcatgcccatcaatgtcgtgacttttatgtccaagaatactgtgtttacgag 53098357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 4419279 - 4419200
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacga 97  Q
    |||| ||||||||||||||||||||||||| ||||| || ||||| ||| |||||| || |||||||  | |||||||||    
T  4419279 tgttgaccttctacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacga 4419200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 42455698 - 42455793
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgagatttgactttgtcat 113  Q
    |||||||||||||||||||||||||| | ||||| | || |||||||||  | ||| || |||||||  | | ||||||||| |||||||||||||    
T  42455698 tgttaaccttctacatagagttcaaatgatcatggataacaatgtcatgttttctaggtccatgaatgttgtttttacgagaattgactttgtcat 42455793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 53170541 - 53170474
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||||| |  ||||||||| ||||||    
T  53170541 agcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctccta 53170474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 54190942 - 54191009
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaata 85  Q
    |||| |||||| ||||||||||||||||| |||||| || ||||||||||||| ||||| ||| ||||    
T  54190942 tgttgaccttccacatagagttcaaagggccatgcataacaatgtcatgactcttaagtccataaata 54191009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 50464387 - 50464467
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||||||| ||||||| ||||||||||||| || ||||||||| |||| || || ||||||  | ||||||||||    
T  50464387 tgttgaccttctacgtagagtttaaagggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgtttacgag 50464467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 600783 - 600862
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacga 97  Q
    |||| ||||||||||||||||||||| ||||||| | ||  |||||||| |||||| || ||| ||| || |||||||||    
T  600783 tgttgaccttctacatagagttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgtttacga 600862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 3330024 - 3329933
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacga 97  Q
    |||| ||||| | ||| |||||||||||||||| |||||||| ||||| |  ||||| ||| |||||| || ||||||| || |||||||||    
T  3330024 agcatcagaggcagttgaccttctacatagagtccaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacga 3329933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 6865911 - 6865966
Alignment:
Q  18 tgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||||||||| ||||||||||||||||||| ||||| |  ||||||||| ||||||    
T  6865911 tgttaaccttttacatagagttcaaagggtaatgcatagcaatgtcatgtctccta 6865966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 16955471 - 16955396
Alignment:
Q  23 accttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    ||||||||||||||||||||| ||||||||| |  ||||||||| |||||| |  |||||||  | ||||||||||    
T  16955471 accttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgag 16955396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 34107775 - 34107842
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactccta 73  Q
    |||| ||||| ||||| |||||||||||||||||||||  |||||||| || ||||| ||| ||||||    
T  34107775 agcaccagaggctgttgaccttctacatagagttcaaaaagtcatgcataacaatgttatgtctccta 34107842  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 50463030 - 50463101
Alignment:
Q  11 cagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatga 82  Q
    ||||||||||| ||||||||| ||||||| |||||| |||||| || |||| |||| |||| ||||| ||||    
T  50463030 cagagactgttgaccttctacgtagagtttaaagggccatgcataacaatgccatgtctcccaagtatatga 50463101  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 23233208 - 23233253
Alignment:
Q  20 ttaaccttctacatagagttcaaagggtcatgcacaataatgtcatg 66  Q
    |||||||||||| |||||||||| |||||||||| ||||||||||||    
T  23233208 ttaaccttctacgtagagttcaa-gggtcatgcataataatgtcatg 23233253  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 26521516 - 26521470
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgc 52  Q
    |||| ||||| ||||| |||||||||||| |||||||||||||||||    
T  26521516 agcaccagaggctgttgaccttctacatacagttcaaagggtcatgc 26521470  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 45761011 - 45761049
Alignment:
Q  131 cttattttctattcatgtgtaattaatccttaatatata 169  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  45761011 cttactttttattcatgtgtaattaatccttaatatata 45761049  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 41945040 - 41945007
Alignment:
Q  137 ttctattcatgtgtaattaatccttaatatatat 170  Q
    |||||||||||||||| |||||||||||||||||    
T  41945040 ttctattcatgtgtaagtaatccttaatatatat 41945007  T

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Target: scaffold0490 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 6362 - 6284
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaat 84  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||||| |  ||||||||| |||||| || |||||||    
T  6362 agcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaat 6284  T

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Target: scaffold0224 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 18443 - 18490
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgca 53  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  18443 agcagtagagattgttaaccttctacatagagtttaaagggtcatgca 18490  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 103134 - 103042
Alignment:
Q  6 agcagcagagactgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaagtacatgaatactatgtttacgag 98  Q
    |||| ||||| ||||| ||||||||||| ||| ||||| ||||||||| || |||||| || |||||| || |||||||  | ||||||||||    
T  103134 agcaccagaggctgttgaccttctacatcgagctcaaaaggtcatgcataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgag 103042  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 16114 - 16074
Alignment:
Q  26 ttctacatagagttcaaagggtcatgcacaataatgtcatg 66  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  16114 ttctacatagagttcaaagggtcatgcatagtaatatcatg 16074  T

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