View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_154 (Length: 249)
Name: NF3772_low_154
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_154 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9997187 - 9997419
Alignment:
| Q |
1 |
tatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatttcgctactatggaccacaatgttgcccggcttttgccaat |
100 |
Q |
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| T |
9997187 |
tatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatttcgctactatggaccacaatgttgcgccgcttttgccaat |
9997286 |
T |
|
| Q |
101 |
atttgacaatatcgttcaaccttatgacatgtgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatc |
200 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9997287 |
atttgacaatatcattcaaccttatgacatatgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatc |
9997386 |
T |
|
| Q |
201 |
ataaagtagttcaagctatgactgagatcattc |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
9997387 |
ataaagtagttcaagctatgactgagatcattc |
9997419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 10003057 - 10003277
Alignment:
| Q |
6 |
gacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatttcgctactatggacca-caatgttgcccggcttttgccaatattt |
104 |
Q |
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| T |
10003057 |
gacaacaaattgtattaaatagtgtgttgcacaacaatagcgatttgttcaaattttgcta-tacgcagtagcgatgttgcgccgcttttgcaaatattt |
10003155 |
T |
|
| Q |
105 |
gacaatatcgttcaaccttatgacatgtgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataa |
204 |
Q |
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| T |
10003156 |
gacaatattgttcaacctaatgacatatgtgtttgaatttataggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataa |
10003255 |
T |
|
| Q |
205 |
agtagttcaagctatgactgag |
226 |
Q |
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| | || ||||||||||||||| |
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| T |
10003256 |
aattgtccaagctatgactgag |
10003277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 10012010 - 10012141
Alignment:
| Q |
95 |
gccaatatttgacaatatcgttcaaccttatgacatgtgtgtttgaatttaaaggtgtgtagagatccaagatggggtagatgttatgaaagttatagtg |
194 |
Q |
| |
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|||| ||||||||||||| |||| ||| |||||||| ||| |||| || || |||| ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
10012010 |
gccactatttgacaatattgttctaccatatgacatatgtttttgtatatataggtttgtagagatccaagatggggtagatgttacgaaagttacagtg |
10012109 |
T |
|
| Q |
195 |
aagatcataaagtagttcaagctatgactgag |
226 |
Q |
| |
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||||||||||| |||| ||| ||||||||||| |
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| T |
10012110 |
aagatcataaaatagtccaatctatgactgag |
10012141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 9990530 - 9990605
Alignment:
| Q |
147 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgac |
222 |
Q |
| |
|
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| T |
9990530 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagcgaagatcataaaatagtccaatctatgac |
9990605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 33356365 - 33356281
Alignment:
| Q |
147 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcat |
231 |
Q |
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|||| ||||||||||||||||||||| | ||||| ||||| || |||||||||| |||||||||||||||||||||||| ||||| |
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| T |
33356365 |
aggtttgtagagatccaagatggggtcggtgttacgaaagctacagtgaagatcctaaagtagttcaagctatgactgaaatcat |
33356281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 33348363 - 33348279
Alignment:
| Q |
147 |
aggtgtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcat |
231 |
Q |
| |
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|||| |||||| |||| ||||||||||| ||||||||||| || ||| |||||| |||| ||||||||||||||||||| ||||| |
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| T |
33348363 |
aggtctgtagaaatccgagatggggtaggtgttatgaaagctacagtcaagatcctaaaatagttcaagctatgactgaaatcat |
33348279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 41894472 - 41894417
Alignment:
| Q |
5 |
tgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatt |
60 |
Q |
| |
|
||||||||||||||| ||||||| || | ||| ||||||| ||||||||||||||| |
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| T |
41894472 |
tgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaatt |
41894417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 32704445 - 32704399
Alignment:
| Q |
21 |
taaatagtgtgtggcacaacaatagcaatttgttcaaatttcgctac |
67 |
Q |
| |
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|||||||||||| ||| ||||||||| ||| |||||||||||||||| |
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| T |
32704445 |
taaatagtgtgtcgcagaacaatagcgattagttcaaatttcgctac |
32704399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 15956933 - 15956878
Alignment:
| Q |
5 |
tgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatt |
60 |
Q |
| |
|
||||||||||||||| ||||||| || |||| ||||||| ||||||||||||||| |
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|
| T |
15956933 |
tgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt |
15956878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 7347739 - 7347693
Alignment:
| Q |
14 |
tttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatt |
60 |
Q |
| |
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|||||| |||||||||| | ||| ||||||||||||||||||||||| |
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| T |
7347739 |
tttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaatt |
7347693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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