View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_158 (Length: 247)
Name: NF3772_low_158
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_158 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7125886 - 7125662
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
7125886 |
tttaaatttacccgatgggtgagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataactaaaccatatcctcaaccatg |
7125787 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7125786 |
aggttaatttgtcggatcacatcactggctttccaaattttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaaac |
7125687 |
T |
|
| Q |
201 |
tgactagcgactgaattaaattagg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7125686 |
tgactagcgactgaattaaattagg |
7125662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 6756472 - 6756275
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
6756472 |
tttaaatttacccgatgggggagctttccatttgaccttgcttctattattagctgcacatgaatcagttgtagataacaaaaccatatcctcaaccatg |
6756373 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
6756372 |
aggttaatttgtcggatcacatcactagctttccaagttttatcacccaaaacaatgttgttcctccaacgccatatccaccatataatagcaacaaa |
6756275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 21812333 - 21812464
Alignment:
| Q |
67 |
agttgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctc |
166 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
21812333 |
agttgtagataacaaaaccatatcctcaaccacgaggttaatttgtcggatcacatcgctggctttccaagttttatcacccaaaacaatgttgttcctc |
21812432 |
T |
|
| Q |
167 |
cagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
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|
| T |
21812433 |
cagcgccatatccaccatatagcagcaacaaa |
21812464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 41011790 - 41011593
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
41011790 |
tttaaatttacccgatgggggagctttccatttgaccttgcttctattattagctgcacatgaattagttgtagataacaaaaccatatcctcaaccatg |
41011691 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
41011690 |
aggttaatttgtcggatcacatcactagctttccaagttttatcacccaaaacaatgttgttcctccagcgccatatccaccatatagcagcaacaaa |
41011593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1808084 - 1808281
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1808084 |
tttaaatttacccgatgggggagctttccatttgaccttgcttctattattagctgcacatgaatcaattgtagataacaaaatcatatcctcaaccatg |
1808183 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
1808184 |
aggttaatttgtcggatcacatcactagcttttcaagttttatcacccaaaacaatgttgttcctccagcgccatatccaccatatagtagcaacaaa |
1808281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 49348885 - 49348688
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
49348885 |
tttaaatttatccgatgggggagctttccatttgaccttgcttctattattagctgcacatgaatcagttgtagataacaaaaccatatcctcaaccatg |
49348786 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
49348785 |
aggttaatttgtcggatcacatcactagctttccaagttttatcacccaaaacaatgttgttcctccagcgccatatccaccatatagtagcaacaaa |
49348688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 31076381 - 31076191
Alignment:
| Q |
8 |
ttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatgaggttaa |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
31076381 |
ttacccgatgggggagctttccatttgaccttgcttctattattagctgcacatgaatcaattgtagataacaaaaccatatcctcaaccatgaggttaa |
31076282 |
T |
|
| Q |
108 |
tttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31076281 |
tttgtcggatcacatcactagctttccaagttttatcacccaatacaatgttgttcctccagcgccatatccaccatatagcagcaacaaa |
31076191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 23109734 - 23109537
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23109734 |
tttaaatttacccgatgggagagctttccatttgaccttgcttctattattagctgcacatgtatcagttgtagataacaaaaccatatcctcaaccatg |
23109635 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
23109634 |
aggttaatttgtcggatcacatcactagcttttcaagttttatcacccaaaacaatgttgttcctccagcgccatatccaccatatagtagcaacaaa |
23109537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 27525241 - 27525044
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
27525241 |
tttaaatttacccgatgggggagctttccatttgaccttgcttctattattagctgcacatgaatcagttgtagataacaaaaccatatccttaaccatg |
27525142 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagcaacaaa |
198 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
27525141 |
aggttaatttgtcagatcacatcactagctttccaagttttatcacccaaaacaatgttgttcctccagcgctatatccaccatatagtagcaacaaa |
27525044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 45951906 - 45951944
Alignment:
| Q |
15 |
atgggggagctttccatttgaccttgcttctattattag |
53 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45951906 |
atgggggagctttccatttgaccttgcttgtattattag |
45951944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 26880872 - 26880681
Alignment:
| Q |
1 |
tttaaatttacctgatgggggagctttccatttgaccttgcttctattattaggtgcacatgaatcagttgtagataacaaaatcatatcctcaaccatg |
100 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
26880872 |
tttatatttacccaatgggggagctttccatttgatcttgattctattattatctgcacatgaatcagttgtagacaacaaagccatatccttaaccatt |
26880773 |
T |
|
| Q |
101 |
aggttaatttgtcggatcacatcactggctttctaagttttatcacctaaaacaatgttgttcctccagcgccatatccaccgtatagcagc |
192 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||| ||| |||||| |||||||| ||||||||| |
|
|
| T |
26880772 |
aggttaatttgtcggatcatatcgctggctttccaagttttatcacccaaaacaatgttgtttctctagcgccgtatccaccatatagcagc |
26880681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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