View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_16 (Length: 549)
Name: NF3772_low_16
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 24081005 - 24081514
Alignment:
| Q |
19 |
gcttgtgcatcacagccaccgcttccaccacctgttgctttcactcctccaccacctgttgcctgtcctcctccagcatccgtatttgctgcacctcctc |
118 |
Q |
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| T |
24081005 |
gcttgtgcatcacagccattacctccgccacctgtttcctgtcctcctccgccacctgttgcatgtcctcctccaccatccgtatttgttgcacctcctc |
24081104 |
T |
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| Q |
119 |
ctccaccattcgttttttctgcacctcctcctccacca---tccgtctttgcagcaccttctcctccaccacccccaaccaatgaaggtttttgggaacc |
215 |
Q |
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| T |
24081105 |
ctccacctttcgtatttgctgcaccacctcctccaccaccatccgtctttgcaacaccttctcctccaccacccccaaccaatgaaggtttttggga--- |
24081201 |
T |
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| Q |
216 |
acttctgaatgtgattagaggctggaataggccaatgactattattgtatctgtggttacactcttgggtggattggggtgttgtggtagaagatatcgt |
315 |
Q |
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| T |
24081202 |
---------tgtgattagaggctggagtaggccaatgactattattgtctctgtggttacactcttggttggattggggtgttgtggtagaagatatcgt |
24081292 |
T |
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| Q |
316 |
cggggaagaggacatcttcaaaatgtggaagacgtaacatctgcaatttctgatctataaaaacatatattagtaattccta-tgctacttgagaggaca |
414 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
24081293 |
cggggaagaggacatcttcaagatgtggaagacgtaacatctgcaatttctgatctataaaaacatatattagtaattcctattgctacttgagacgaca |
24081392 |
T |
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| Q |
415 |
ataaaacttatatttaatatgttttaaattccggtgaaagttttatcaaaacataaaaacatatatcattggttttattatgctattgctaccataccat |
514 |
Q |
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| T |
24081393 |
acaaaacttatctttaatatgttttaaatttgggtgaaagttttatcaaaacataaaaac--atatcattggttttattatgctattgctactataccat |
24081490 |
T |
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| Q |
515 |
ttcagtctttcgatgttctcctat |
538 |
Q |
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| T |
24081491 |
ttcagtctttcgatgttctcctat |
24081514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 29109561 - 29109476
Alignment:
| Q |
227 |
tgattagaggctggaataggccaatgactattattgtatctgtggttacactcttgggtggattggggtgttgtggtagaagatat |
312 |
Q |
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| T |
29109561 |
tgattagagactggaataggactatgaccattattgtctctgtggttatattcttgggtggattgaggtattgtggtagaagatat |
29109476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 29262614 - 29262698
Alignment:
| Q |
228 |
gattagaggctggaataggccaatgactattattgtatctgtggttacactcttgggtggattggggtgttgtggtagaagatat |
312 |
Q |
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| T |
29262614 |
gattagaggctggaatatgactatgactattattgtctctgtggttatattcttaggtggattaaggtgttgtggtaggagatat |
29262698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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