View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_160 (Length: 247)
Name: NF3772_low_160
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_160 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 50979920 - 50980155
Alignment:
| Q |
1 |
tgatgtctttttaactcaattttgctgatgtcgttgacttgggtgcatgataacattttagatgattctccatgctttagtgtatagaagaatgcaatta |
100 |
Q |
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| T |
50979920 |
tgatgtctttttaactcaattttgctgatgtccttgacttgggtgcatgataacattttagatgattttccatgctttagtgtatagaggaatgcaatta |
50980019 |
T |
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| Q |
101 |
tgcagaaattttgtattaattcattgagatagaacgttatttatgctcgcattaagacatgcctagttagtgtagatataaatacaacagtactaaaaat |
200 |
Q |
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| T |
50980020 |
tgcagaaattttgtattaattcattgagatagaacgttatttatgctcgcattaagacatgcctagttagtgtagatataaatacaacactactaaaaat |
50980119 |
T |
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| Q |
201 |
caaggccaggaaaagagaaattacaatgattatgat |
236 |
Q |
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| T |
50980120 |
caaggccaggaaaagagaaattacaatgattatgat |
50980155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 50958420 - 50958502
Alignment:
| Q |
72 |
atgctttagtgtatagaagaatgcaattatgcagaaattttgtattaattcattgagatagaacgttatttatgctcgcatta |
154 |
Q |
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| T |
50958420 |
atgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcatta |
50958502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 15856772 - 15856824
Alignment:
| Q |
88 |
aagaatgcaattatgcagaaattttgtattaattcattgagatagaacgttat |
140 |
Q |
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| T |
15856772 |
aagaatgcaatcatgcagaaattttgtatgagttcattgagatggaacattat |
15856824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 33632276 - 33632344
Alignment:
| Q |
62 |
atgattctccatgctttagtgtatagaagaatgcaattatgcagaaattttgtattaattcattgagat |
130 |
Q |
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| T |
33632276 |
atgattttcaatgctttacagtatagaagaatgcaattttgcagaaattttgtatgaattcattgagat |
33632344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 8156634 - 8156791
Alignment:
| Q |
83 |
tatagaagaatgca-attatgcagaaattttgtattaattcattgagatagaacgttatttatgctcgca--------ttaagacatgcctagttagtgt |
173 |
Q |
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| T |
8156634 |
tatagaagattgcatattatgcagacattttgtatgaattcattgagatggaacattatttatgttggcattatgtgcttaagatattcctagtcagtgt |
8156733 |
T |
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| Q |
174 |
agatataaatacaacagtactaaaaatcaaggccaggaaaagagaaattacaatgatta |
232 |
Q |
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| T |
8156734 |
agatataactataatagcattaaaaa-caaggccgggaaaagagaagatacaatgatta |
8156791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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