View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_161 (Length: 246)

Name: NF3772_low_161
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_161
NF3772_low_161
[»] chr4 (20 HSPs)
chr4 (1-130)||(23001931-23002060)
chr4 (7-130)||(28068041-28068164)
chr4 (10-130)||(37830279-37830399)
chr4 (10-126)||(28708982-28709097)
chr4 (152-238)||(47878520-47878606)
chr4 (152-229)||(31844723-31844800)
chr4 (152-240)||(53771083-53771171)
chr4 (27-82)||(26893207-26893262)
chr4 (27-82)||(42396856-42396911)
chr4 (35-126)||(44546441-44546532)
chr4 (35-126)||(11821326-11821418)
chr4 (35-75)||(39868203-39868243)
chr4 (152-228)||(42278050-42278126)
chr4 (153-229)||(47874566-47874642)
chr4 (152-228)||(54574426-54574502)
chr4 (35-126)||(17186098-17186189)
chr4 (153-240)||(53770335-53770422)
chr4 (152-230)||(4703261-4703339)
chr4 (158-240)||(26172976-26173058)
chr4 (167-201)||(26685490-26685524)
[»] scaffold1822 (1 HSPs)
scaffold1822 (7-130)||(1172-1295)
[»] chr2 (21 HSPs)
chr2 (135-232)||(40000376-40000473)
chr2 (147-240)||(32766273-32766366)
chr2 (152-240)||(31091561-31091649)
chr2 (158-233)||(24459487-24459562)
chr2 (150-240)||(31090163-31090253)
chr2 (159-240)||(39015013-39015094)
chr2 (35-126)||(45468309-45468400)
chr2 (152-240)||(17330264-17330352)
chr2 (35-126)||(45701346-45701437)
chr2 (152-199)||(14705122-14705169)
chr2 (147-229)||(5915037-5915119)
chr2 (158-240)||(34037707-34037789)
chr2 (153-223)||(38854791-38854861)
chr2 (184-240)||(2910133-2910189)
chr2 (172-240)||(17466862-17466930)
chr2 (27-82)||(26438210-26438265)
chr2 (153-240)||(32764940-32765027)
chr2 (153-223)||(8420015-8420085)
chr2 (152-238)||(24458061-24458147)
chr2 (34-127)||(30515935-30516028)
chr2 (153-217)||(14887555-14887619)
[»] chr5 (28 HSPs)
chr5 (10-130)||(16119831-16119951)
chr5 (16-128)||(20251649-20251761)
chr5 (152-240)||(28591148-28591236)
chr5 (152-229)||(2466819-2466896)
chr5 (27-126)||(13390507-13390606)
chr5 (153-240)||(18400192-18400279)
chr5 (152-233)||(9538090-9538171)
chr5 (152-233)||(25590432-25590512)
chr5 (152-240)||(8074452-8074540)
chr5 (10-97)||(23264243-23264330)
chr5 (35-126)||(26397450-26397541)
chr5 (147-229)||(21069285-21069367)
chr5 (148-229)||(9537020-9537101)
chr5 (152-200)||(14891217-14891265)
chr5 (152-196)||(24900410-24900454)
chr5 (35-126)||(40632806-40632897)
chr5 (158-240)||(544657-544737)
chr5 (53-127)||(33651105-33651179)
chr5 (152-229)||(2464670-2464747)
chr5 (53-126)||(9194713-9194786)
chr5 (152-240)||(4592862-4592950)
chr5 (172-228)||(19182971-19183027)
chr5 (35-126)||(37268146-37268237)
chr5 (147-229)||(546081-546162)
chr5 (147-221)||(13651173-13651246)
chr5 (147-233)||(16611724-16611810)
chr5 (152-233)||(8075874-8075955)
chr5 (189-238)||(19186256-19186305)
[»] chr3 (23 HSPs)
chr3 (152-238)||(34263806-34263892)
chr3 (147-240)||(52318351-52318444)
chr3 (10-126)||(25280534-25280650)
chr3 (152-240)||(48572986-48573074)
chr3 (152-229)||(45600983-45601060)
chr3 (152-240)||(2591628-2591716)
chr3 (152-240)||(36278953-36279041)
chr3 (147-229)||(2592052-2592134)
chr3 (147-229)||(33428480-33428562)
chr3 (152-238)||(55389505-55389591)
chr3 (152-240)||(17700519-17700607)
chr3 (184-238)||(11773087-11773141)
chr3 (160-226)||(19331117-19331183)
chr3 (152-229)||(19115191-19115268)
chr3 (147-240)||(47118085-47118178)
chr3 (147-228)||(55388069-55388150)
chr3 (158-238)||(50753824-50753904)
chr3 (153-240)||(17701953-17702040)
chr3 (159-229)||(19114541-19114611)
chr3 (31-130)||(31644107-31644206)
chr3 (45-127)||(10773068-10773150)
chr3 (190-224)||(33427791-33427825)
chr3 (160-240)||(20464078-20464158)
[»] chr7 (29 HSPs)
chr7 (152-240)||(44333140-44333228)
chr7 (153-240)||(10899107-10899194)
chr7 (158-240)||(35727706-35727788)
chr7 (147-240)||(7258271-7258364)
chr7 (153-238)||(48646051-48646136)
chr7 (150-233)||(30925049-30925132)
chr7 (149-240)||(46286501-46286592)
chr7 (34-127)||(644845-644938)
chr7 (152-240)||(35729120-35729208)
chr7 (153-229)||(43457459-43457535)
chr7 (152-240)||(48788706-48788794)
chr7 (153-240)||(12223733-12223820)
chr7 (153-223)||(24934806-24934876)
chr7 (153-221)||(21062819-21062887)
chr7 (152-232)||(48647485-48647565)
chr7 (147-194)||(21561874-21561921)
chr7 (35-126)||(22681606-22681697)
chr7 (167-233)||(8374930-8374996)
chr7 (28-82)||(38889788-38889842)
chr7 (163-229)||(42477393-42477459)
chr7 (152-228)||(45583685-45583761)
chr7 (152-240)||(48777257-48777345)
chr7 (35-126)||(6458923-6459014)
chr7 (35-126)||(7567110-7567201)
chr7 (27-82)||(13428108-13428163)
chr7 (184-238)||(7259720-7259774)
chr7 (34-75)||(43656001-43656042)
chr7 (45-82)||(45140297-45140334)
chr7 (153-233)||(34704911-34704991)
[»] chr6 (5 HSPs)
chr6 (34-123)||(25026885-25026974)
chr6 (147-238)||(30747995-30748086)
chr6 (152-228)||(31218956-31219032)
chr6 (148-228)||(31219206-31219286)
chr6 (153-233)||(6468822-6468902)
[»] chr8 (11 HSPs)
chr8 (152-229)||(35178849-35178926)
chr8 (147-240)||(32898479-32898572)
chr8 (27-126)||(29934516-29934615)
chr8 (34-125)||(15353181-15353272)
chr8 (152-240)||(35177396-35177484)
chr8 (35-126)||(17936156-17936247)
chr8 (152-238)||(41753999-41754085)
chr8 (152-229)||(10407629-10407706)
chr8 (153-192)||(36032708-36032747)
chr8 (28-78)||(39919459-39919509)
chr8 (196-240)||(45476207-45476251)
[»] chr1 (15 HSPs)
chr1 (163-233)||(7945595-7945665)
chr1 (152-229)||(10332987-10333064)
chr1 (159-240)||(52440593-52440674)
chr1 (152-233)||(5782415-5782496)
chr1 (152-240)||(32665804-32665892)
chr1 (149-240)||(6612417-6612508)
chr1 (175-229)||(534602-534656)
chr1 (152-232)||(52439480-52439560)
chr1 (190-233)||(9341066-9341109)
chr1 (35-126)||(24509475-24509566)
chr1 (152-226)||(9339647-9339721)
chr1 (171-240)||(10333220-10333289)
chr1 (34-75)||(33567306-33567347)
chr1 (152-232)||(22856681-22856761)
chr1 (152-200)||(34088535-34088583)
[»] scaffold0039 (1 HSPs)
scaffold0039 (152-229)||(79074-79151)
[»] scaffold0034 (1 HSPs)
scaffold0034 (152-229)||(116056-116133)
[»] scaffold1251 (1 HSPs)
scaffold1251 (35-76)||(1226-1267)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 23002060 - 23001931
Alignment:
Q  1 ccaaagaataaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccga 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23002060 ccaaagaaaaaaactaaacaatcacctgatacccatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccga 23001961  T
Q  101 agccataaaaaagaattcagcttcactttt 130  Q
    |||||||| ||||| |||||||||||||||    
T  23001960 agccataagaaagagttcagcttcactttt 23001931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 28068164 - 28068041
Alignment:
Q  7 aataaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccat 106  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||    
T  28068164 aataaaacaaaacaatcacctgatacccatacaaagtagtggatacctccaccaatcattaaaaccaaacgaacaagaaacaacattagaccgaagccat 28068065  T
Q  107 aaaaaagaattcagcttcactttt 130  Q
    |||||||| |||||||||||||||    
T  28068064 aaaaaagagttcagcttcactttt 28068041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 37830399 - 37830279
Alignment:
Q  10 aaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaa 109  Q
    |||||||||||||||| ||||||  | ||| | ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  37830399 aaaactaaacaatcacatgatacctacacacaatagtggatacctccaccaatcgtgaaaatcaaacagaaaagaaacaacatttgaccgaagccataaa 37830300  T
Q  110 aaagaattcagcttcactttt 130  Q
     |||| |||||||||||||||    
T  37830299 gaagagttcagcttcactttt 37830279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 28709097 - 28708982
Alignment:
Q  10 aaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaa 109  Q
    ||||||||| ||| || |||| | ||||||||||| ||| || ||||||||||||||||| ||||||| || || |||||||||||||   |||||||||    
T  28709097 aaaactaaaaaattacatgatgcccatacaaagta-tgggtatctccaccaatcatgaaagccaaacgaaagaggaacaacatttgacgacagccataaa 28708999  T
Q  110 aaagaattcagcttcac 126  Q
    |||||||||| ||||||    
T  28708998 aaagaattcaccttcac 28708982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 47878606 - 47878520
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    ||||| ||||||||| ||||||||||||||| ||||||| |||||||||| ||| |  |||||||||||||||||||| ||| ||||    
T  47878606 caaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactct 47878520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 31844723 - 31844800
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||| ||||||  |||||||| |||||||||||||||||| ||| | ||||||||||||||| |||||    
T  31844723 caaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtc 31844800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 53771171 - 53771083
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| |||||||||||||||| ||| |||||||||||||| ||| | || |||||||||||| ||| | ||| ||||||    
T  53771171 caaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgc 53771083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 26893262 - 26893207
Alignment:
Q  27 tgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaa 82  Q
    |||||| ||||||||  |||||||| | ||||||||||||||||||||||||||||    
T  26893262 tgatacccatacaaaaaagtggatatcgccaccaatcatgaaaaccaaacggaaaa 26893207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 42396856 - 42396911
Alignment:
Q  27 tgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaa 82  Q
    |||||| |||||||| ||||||||| | |||||| |||||||||||||||||||||    
T  42396856 tgatacccatacaaaatagtggatatcgccaccagtcatgaaaaccaaacggaaaa 42396911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 44546532 - 44546441
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | ||||||||||||||||| | ||||||  || |  ||| | ||||||  |||||||||||||||||||||||||||    
T  44546532 atacaaagaagtgggtgcctccaccaatcatgaagagcaaacgccaatggtacaccgtttgacgaaagccataaaaaagaattcagcttcac 44546441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 11821418 - 11821326
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccat-aaaaaagaattcagcttcac 126  Q
    |||||||| ||||  |||||| ||||||||||||||||||||| ||  |  |||| |||||||   |||||| ||||||||||||||||||||    
T  11821418 atacaaagaagtgcgtacctctaccaatcatgaaaaccaaacgcaattggtacaaaatttgacgagagccataaaaaaagaattcagcttcac 11821326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 39868243 - 39868203
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaa 75  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  39868243 atacaaagaagtgggtacctccaccaatcatgaaaaccaaa 39868203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 42278050 - 42278126
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagt 228  Q
    ||||| |||||||| |||| ||| ||||||  | |||||||||||||||| ||| |  |||||||||||||||||||    
T  42278050 caaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagt 42278126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 47874566 - 47874642
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||| |||||||| ||| |||| ||||||  ||||| |||||||||||| ||| | | |||||||||||||||||||    
T  47874566 aaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtc 47874642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 54574426 - 54574502
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagt 228  Q
    ||||| |||| |||| | ||| ||||||||  |||||||||||||||||  ||| | ||||||||||||||||||||    
T  54574426 caaatagtcattttgcttcctcactctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagt 54574502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 17186189 - 17186098
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | |||||||||||||||||||||||| |  ||||  |||  |||||||   |||||||||||||||| |||| ||||    
T  17186189 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaatgccaaagctacagaatttgacgagagccataaaaaagaatccagcctcac 17186098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 53770335 - 53770422
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| |||||||| ||| |||||||||||| ||||  |||||||||| | ||| | || |||||||||||| |||||| || ||||||    
T  53770335 aaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgc 53770422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 4703339 - 4703261
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtct 230  Q
    |||||||||||||| ||  |||||||| ||  |||||||||||||||||| | | | || |||||||||||| ||||||    
T  4703339 caaattgtcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtct 4703261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 26173058 - 26172976
Alignment:
Q  158 gtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||||||| |||||  ||| ||||| |  |||||| | |||||||||| | | ||||||||||||||||||||||| ||||||    
T  26173058 gtcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctgactctgc 26172976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 26685524 - 26685490
Alignment:
Q  167 gtccctgactctgcacatcgctgtcacataggtcc 201  Q
    |||||||||||||||| ||||||||||||||||||    
T  26685524 gtccctgactctgcacctcgctgtcacataggtcc 26685490  T

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Target: scaffold1822 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 1172 - 1295
Alignment:
Q  7 aataaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccat 106  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||    
T  1172 aataaaacaaaacaatcacctgatacccatacaaagtagtggatacctccaccaatcattaaaaccaaacgaacaagaaacaacattagaccgaagccat 1271  T
Q  107 aaaaaagaattcagcttcactttt 130  Q
    |||||||| |||||||||||||||    
T  1272 aaaaaagagttcagcttcactttt 1295  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 40000473 - 40000376
Alignment:
Q  135 taattttatctgatgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctct 232  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  40000473 taattttatctaatgaacaaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctct 40000376  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 32766366 - 32766273
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||| | ||||||||||||||||||||| ||| ||||||    
T  32766366 atgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgc 32766273  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 31091649 - 31091561
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||||| ||| | ||||||||||||||||||||| ||| ||||||    
T  31091649 caaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgc 31091561  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 24459562 - 24459487
Alignment:
Q  158 gtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  24459562 gtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctg 24459487  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 31090163 - 31090253
Alignment:
Q  150 aacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||||| |||| ||| |||||||| ||||||  |||||||||||||||||||||| | ||||||||||| ||||||||||||| ||||||    
T  31090163 aacaaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgc 31090253  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 39015013 - 39015094
Alignment:
Q  159 tcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||||| |||||||||||||||| |||||| ||||||| ||||||| | ||||||||||||||||| |||| || ||||||    
T  39015013 tcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgc 39015094  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 45468309 - 45468400
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | ||||||||||||||||||||||||||  |  |  |||| |||||||  |||||||||||||||||||||||||||    
T  45468309 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaacgccattggtacaaaatttgacgaaagccataaaaaagaattcagcttcac 45468400  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 17330352 - 17330264
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| ||| |||| |||| ||| ||||||  || ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||||    
T  17330352 caaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgc 17330264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 45701346 - 45701437
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | || |||||||||||||||||||||||  |  |  |||| |||||||  |||||||||||||||||||||||||||    
T  45701346 atacaaagaagtgggtgcccccaccaatcatgaaaaccaaacgccattggtacaaaatttgacgaaagccataaaaaagaattcagcttcac 45701437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 14705169 - 14705122
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggt 199  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  14705169 caaatagtcactttggtcccggactctgcacctcgctgtcacataggt 14705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 5915119 - 5915037
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||| ||||| |||||||| |||| ||||||||||| ||||| ||| ||||||| |||| | || |||||||||||| |||||    
T  5915119 atgagcaaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtc 5915037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 34037789 - 34037707
Alignment:
Q  158 gtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||||||| |||| ||||||||||| | ||||||| | |||||| | | | |||||||||||||||||||||| || ||||||    
T  34037789 gtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgc 34037707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 38854791 - 38854861
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaa 223  Q
    |||| ||||||||||||||||||||| ||| ||| ||||| | ||||| |||| | |||||||||||||||    
T  38854791 aaatagtcactttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatacaaa 38854861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 2910133 - 2910189
Alignment:
Q  184 tcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||||||||||||| ||| ||| |  |||||||||||||||||||||||| ||||||    
T  2910133 tcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgc 2910189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 17466930 - 17466862
Alignment:
Q  172 tgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||||||||| ||||||||||||| | |  ||| | ||||||||||||||| ||||||||| ||||||    
T  17466930 tgactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgc 17466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 26438265 - 26438210
Alignment:
Q  27 tgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaa 82  Q
    |||||| |||||||| ||||||||| | ||||||||||||||||| ||||| ||||    
T  26438265 tgatacccatacaaaatagtggatatcgccaccaatcatgaaaactaaacgaaaaa 26438210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 32764940 - 32765027
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| |||||||| |||||||| ||||||  | | ||||| |||||||  ||| | ||||||||||||||||||||| ||| ||||||    
T  32764940 aaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgc 32765027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 8420015 - 8420085
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaa 223  Q
    |||| ||||||||||||||||||||||||  |||| |||||| | |||| ||| | | |||||||||||||    
T  8420015 aaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaa 8420085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 24458061 - 24458147
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    ||||| |||||||| |||||||| | ||||  ||||| |||||||||||| ||| | |  ||||||||||||||||| |||| ||||    
T  24458061 caaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactct 24458147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 30515935 - 30516028
Alignment:
Q  34 catacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcact 127  Q
    ||||||||| ||||  || ||||||||||| |||||||||||||  |||| |  |||||| ||   ||||||||||||||| |||| |||||||    
T  30515935 catacaaagaagtgagtatctccaccaatcgtgaaaaccaaacgataaaggagtaacattcgaagaaagccataaaaaagagttcaacttcact 30516028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 14887619 - 14887555
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaa 217  Q
    |||| ||||||||||||||  ||||||||| ||||||||||  |||||| ||| | |||||||||    
T  14887619 aaatggtcactttggtcccaaactctgcacctcgctgtcacgaaggtccctgactcaggattaaa 14887555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 16119951 - 16119831
Alignment:
Q  10 aaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaa 109  Q
    ||||||||||||| || |||||| |||||||||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||  | ||||||||    
T  16119951 aaaactaaacaattacatgatacccatacaaagtagtggatatctccaccaatcgtgaaaatcaaacggaagagaaacaacatttgacgaaggccataaa 16119852  T
Q  110 aaagaattcagcttcactttt 130  Q
    |||||||||| ||||||||||    
T  16119851 aaagaattcaacttcactttt 16119831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 20251649 - 20251761
Alignment:
Q  16 aaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaa 115  Q
    |||||||||| |||||| ||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||||||  |||||||||||||||     
T  20251649 aaacaatcacatgatacccatacaaagcaatggatacctccaccaatcgtgaaaaccaaacgaaaaagaaacaacatttgacaaaagccataaaaaagag 20251748  T
Q  116 ttcagcttcactt 128  Q
    |||| ||||||||    
T  20251749 ttcatcttcactt 20251761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 28591236 - 28591148
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||| || ||| ||||||    
T  28591236 caaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgc 28591148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 2466896 - 2466819
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||||||| |||||||||||| ||||| ||||||||||| |||||| ||||||||||| |||||||||    
T  2466896 caaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtc 2466819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 13390507 - 13390606
Alignment:
Q  27 tgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||| ||||||| ||||||| || || |||||||| ||||| |||||||||| || |||||||||||||  |||| ||||||||||||||| ||||||    
T  13390507 tgatacccatacaaggtagtgggtatcttcaccaatcgtgaaagccaaacggaagaggaacaacatttgacgaaagctataaaaaagaattcaacttcac 13390606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 18400192 - 18400279
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| |||||||| |||||||||||||||| || ||||||||||||||||||| | ||||||||||| ||| ||||| ||| ||||||    
T  18400192 aaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgc 18400279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 9538171 - 9538090
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    ||||| ||||||||||||||||||||||||  ||| ||||| |||||||| ||| | ||||||||||||||| |||||||||    
T  9538171 caaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctg 9538090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 25590432 - 25590512
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    ||||| ||||||||| |  |||||||||||| |||||||||||||||||| ||| |  ||||||||||||||||||||||||    
T  25590432 caaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgact-cggattaaatacaaataagtctctg 25590512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 8074452 - 8074540
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| |||||||| | ||||  ||||||||||||| |||| ||| | ||||||||||||||||||||| ||| ||||||    
T  8074452 caaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgc 8074540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 23264243 - 23264330
Alignment:
Q  10 aaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgac 97  Q
    ||||||||||||| || |||||| |||||| |||| |||||| ||| ||||||| | ||||||||| |||| || |||||||||||||    
T  23264243 aaaactaaacaattacatgatacccatacacagtaatggatatctctaccaatcgtaaaaaccaaatggaagaggaacaacatttgac 23264330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 26397450 - 26397541
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | |||||||||||||||||||||||| |  ||||| |||  |||||||   |||||||||||||||| |||||||||    
T  26397450 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaaagccaaagatacagaatttgacgagagccataaaaaagaatccagcttcac 26397541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 21069285 - 21069367
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||| ||||| |||||||| ||| |||||||||||| ||| ||||||| |||||  ||| | |||||||||||||||||||||    
T  21069285 atgagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtc 21069367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 9537020 - 9537101
Alignment:
Q  148 tgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||||||| || ||||| |||||| ||||||||| |||||||||||||||||  ||| | || |||||||||||| |||||    
T  9537020 tgaacaaatggtgactttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc 9537101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 14891265 - 14891217
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtc 200  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  14891265 caaatagtcactttggtccctcactctgcacctcgctgtcacataggtc 14891217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 24900454 - 24900410
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacata 196  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||    
T  24900454 caaatagtcactttggtccctgactctgcacctcgctgtcacata 24900410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 40632806 - 40632897
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | ||||||||||||||||||| |||| |  ||||  |||  |||||||   ||||||||||||||||||||||||||    
T  40632806 atacaaagaagtgggtgcctccaccaatcatgaaaatcaaatgccaaagttacagaatttgacgagagccataaaaaagaattcagcttcac 40632897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 544657 - 544737
Alignment:
Q  158 gtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||||||||||| ||||||||||| ||| ||||| |||||||  ||| | ||||||||||||||||||||| ||| ||||||    
T  544657 gtcactttggtcc-tgactctgcacttcg-tgtcagataggtctctgactcaggattaaatacaaataagtcactgactctgc 544737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 33651179 - 33651105
Alignment:
Q  53 ctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcact 127  Q
    |||||||||||||||||||||||||  || | || |||||| ||   ||||||||||||| ||||||||||||||    
T  33651179 ctccaccaatcatgaaaaccaaacgataatggaataacattcgaagaaagccataaaaaaaaattcagcttcact 33651105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 2464670 - 2464747
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||| ||| |||| ||||||  ||||||||| |||||||| ||| | | |||||||||||||||||||    
T  2464670 caaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtc 2464747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 9194713 - 9194786
Alignment:
Q  53 ctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    ||||||||||||||||||||||||| ||  |  |||| ||| |||  |||||||||||| ||||||||||||||    
T  9194713 ctccaccaatcatgaaaaccaaacgcaactggtacaaaattcgacgaaagccataaaaaggaattcagcttcac 9194786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 4592862 - 4592950
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| |||||||| | || |  ||||||||||||| |||| ||| | | ||||||||||||||||||| ||| ||||||    
T  4592862 caaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgc 4592950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 19182971 - 19183027
Alignment:
Q  172 tgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagt 228  Q
    ||||| ||||| |||||||||||||||||  ||| | ||||||||||||||||||||    
T  19182971 tgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagt 19183027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 37268237 - 37268146
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||||||||| | ||||||||||||||||| | ||||||  || | |||| |  |||||  ||||||||||||||| |||| ||||||    
T  37268237 atacaaagtagtgggtgcctccaccaatcatgaagagcaaacgccaatggaacaccgcttgacgaaagccataaaaaagagttcaacttcac 37268146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 546162 - 546081
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||| ||||| |||||||| ||||| || | ||||  |||||||||||||||||| ||| | ||||||||||||| |||||||    
T  546162 atgagcaaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtc 546081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 13651246 - 13651173
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaataca 221  Q
    |||| ||||| |||||||| |||| ||||| ||||| | |||||||||||||||| ||| | |||||||||||||    
T  13651246 atgagcaaatagtcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 16611724 - 16611810
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    |||| ||||| ||||||||  | | ||||||| ||| |||||||||||||||||  ||| | ||||||||||||||| ||| |||||    
T  16611724 atgagcaaatggtcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctg 16611810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 8075955 - 8075874
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    ||||| ||| ||||||||  ||||||||||| ||||||| | |||| ||| ||||| | ||||||||||||| |||| ||||    
T  8075955 caaatagtcgctttggtcattgactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctg 8075874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 19186305 - 19186256
Alignment:
Q  189 gtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||| ||||    
T  19186305 gtcacataggtccctgacttaggattaaatacaaacaagtctctgactct 19186256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 34263806 - 34263892
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    ||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||    
T  34263806 caaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactct 34263892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 52318444 - 52318351
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| ||||| |||||||||||| |||||||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||| ||| ||||||    
T  52318444 atgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgc 52318351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 25280534 - 25280650
Alignment:
Q  10 aaaactaaacaatcacctgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaa 109  Q
    ||||||||| ||| || |||| | ||||||||||||||| || ||||| ||||||||||| ||||||| || || |||||||||||||   |||||||||    
T  25280534 aaaactaaaaaattacatgatgcccatacaaagtagtgggtatctccatcaatcatgaaagccaaacgaaagaggaacaacatttgacgacagccataaa 25280633  T
Q  110 aaagaattcagcttcac 126  Q
    |||||||||| ||||||    
T  25280634 aaagaattcaccttcac 25280650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 48572986 - 48573074
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||| ||| | ||||||||||||||||||| ||||| ||||||    
T  48572986 caaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgc 48573074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 45601060 - 45600983
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||| |||||||||||||  | |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  45601060 caaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc 45600983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 2591628 - 2591716
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| |||||||| ||||||  | |||||||||||||||| ||| | ||||||||||||||| ||||||||| ||||||    
T  2591628 caaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgc 2591716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 36278953 - 36279041
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| |||||||| | | ||  ||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  36278953 caaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgc 36279041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 2592134 - 2592052
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||| ||||| |||||||| |||||| | ||||||  |||||||||||||||||| ||| | |||||||||||||||||||||    
T  2592134 atgagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 2592052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 33428562 - 33428480
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||| ||||| |||||||| |||||||||||||||| ||| |||||||||||||| ||| | || |||||||||||| |||||    
T  33428562 atgagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtc 33428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 55389591 - 55389505
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||| |||| | |  ||||||||||| |||||| ||| ||||    
T  55389591 caaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactct 55389505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 17700519 - 17700607
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| |||  ||||||||||| ||| |||||||||||| | ||| | ||||||||||||||||||||| ||| ||||||    
T  17700519 caaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgc 17700607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 11773141 - 11773087
Alignment:
Q  184 tcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||    
T  11773141 tcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactct 11773087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 19331117 - 19331183
Alignment:
Q  160 cactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataa 226  Q
    |||||| || ||||||||||||| | |||||||||||||||| ||| | ||||||||||||||||||    
T  19331117 cactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 19115268 - 19115191
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||| || | ||||||||||| ||| |||||||||||||||| | | ||||||||||||||| |||||    
T  19115268 caaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtc 19115191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 47118178 - 47118085
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| ||||| |||||||| |||||||||||||||| ||| ||||| ||| ||||  || | |||||||||| |||| ||||||||| ||||||    
T  47118178 atgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgc 47118085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 55388069 - 55388150
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagt 228  Q
    |||| ||||| |||||||| |||||||| ||||||  ||||||||| |||||||  ||| | ||||||||||||||||||||    
T  55388069 atgagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagt 55388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 50753824 - 50753904
Alignment:
Q  158 gtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    |||||||| ||||||  |||||||| |||||||||||||||||| | ||| ||||||||||| ||| |||| |||| ||||    
T  50753824 gtcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctgactct 50753904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 17702040 - 17701953
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| |||||||| ||| |||| ||||||  ||||||||| |||||||| ||| | | ||||||||||||||||||| ||| ||||||    
T  17702040 aaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgc 17701953  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 19114541 - 19114611
Alignment:
Q  159 tcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||||| |||||||||||||||| ||| ||||||| |||||| ||| | | ||||||||||||| |||||    
T  19114541 tcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtc 19114611  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 31644107 - 31644206
Alignment:
Q  31 acacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcactttt 130  Q
    |||||||||||  ||||| |  | |||||||||||||||||||||||  | || ||||| ||| ||   ||||||||||||||| |||| ||||||||||    
T  31644107 acacatacaaacgagtgggtgtcgccaccaatcatgaaaaccaaacgttataggaacaaaattcgaagaaagccataaaaaagagttcaacttcactttt 31644206  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 10773150 - 10773068
Alignment:
Q  45 gtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcact 127  Q
    ||||||| | ||||||||||||||||||||||||||||  | | ||||| |||  |||||| ||||||||   ||||||||||    
T  10773150 gtggatatcgccaccaatcatgaaaaccaaacggaaaactagccacattggacgaaagccaaaaaaaagacaacagcttcact 10773068  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 33427791 - 33427825
Alignment:
Q  190 tcacataggtccttgattgaggattaaatacaaat 224  Q
    |||||||||||||||||| ||||||||||||||||    
T  33427791 tcacataggtccttgattcaggattaaatacaaat 33427825  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 20464078 - 20464158
Alignment:
Q  160 cactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||||| ||||| |||||||||| ||| ||||||| |||||| ||  | | ||||||||||||| ||||| ||| ||||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgc 20464158  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 44333140 - 44333228
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| | | ||||||||||||||||||||||| ||||||    
T  44333140 caaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgc 44333228  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 10899194 - 10899107
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||   ||||||||||||||||||||||||| ||||||    
T  10899194 aaattgttactttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgc 10899107  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 35727706 - 35727788
Alignment:
Q  158 gtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||||    
T  35727706 gtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgc 35727788  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 7258271 - 7258364
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| ||||| ||||||||||||||||||||| ||| ||| |||||||||||||| | | | ||||||||||||||||||||||||| ||||||    
T  7258271 atgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgc 7258364  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 48646051 - 48646136
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||| ||| | ||||||||||||||||||||| ||| ||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactct 48646136  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 30925132 - 30925049
Alignment:
Q  150 aacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    ||||||| ||||||||  ||||||| ||||||  || | ||||||||||||||||| | |||||||||||||||||||||||||    
T  30925132 aacaaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctg 30925049  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 46286501 - 46286592
Alignment:
Q  149 gaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||||||| |||||||| |||||||||||| ||  ||||||| | | |||||| ||| | ||||||||||||||||||||||||| ||||||    
T  46286501 gaacaaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgc 46286592  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 644938 - 644845
Alignment:
Q  34 catacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcact 127  Q
    |||| |||| |||||||| |||||||||||||||||||||||||  |||| |  |||||| ||   ||||||||||||||| ||||||||||||    
T  644938 catataaagaagtggatatctccaccaatcatgaaaaccaaacgataaaggactaacattcgaagaaagccataaaaaagagttcagcttcact 644845  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 35729208 - 35729120
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| ||||||||  ||||||| | ||||  |||||||||||||||||||||| | ||||||| ||||||||||||| ||| ||||||    
T  35729208 caaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgc 35729120  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 43457459 - 43457535
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||| |||||||| |||||||| ||||||  |||||||| ||||||||| ||| | |||||||||||||||||||||    
T  43457459 aaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtc 43457535  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 48788794 - 48788706
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| ||||||||| ||| ||||| ||||| |||||||||||||||||| ||| | |  |||||||| ||||||||||||| ||||||    
T  48788794 caaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgc 48788706  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 12223820 - 12223733
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| |||||||| ||||||||| |||||||||  |||||||||||||| ||| | ||||||||||| ||| ||||| ||| ||||||    
T  12223820 aaatggtcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgc 12223733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 24934806 - 24934876
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaa 223  Q
    |||| ||||||||||||||| |||||||| |||||||||||| |||||  ||| | |||||||||||||||    
T  24934806 aaatggtcactttggtccctaactctgcatatcgctgtcacaaaggtctctgacttaggattaaatacaaa 24934876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 21062819 - 21062887
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaataca 221  Q
    |||| |||||||| |||||||||| ||||| ||||||||| | |||||||||| | |||||||||||||    
T  21062819 aaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaataca 21062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 48647565 - 48647485
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctct 232  Q
    ||||| |||||||| | |||||| ||| ||  ||||| |||||||||||| ||| | ||||||||||||||||||||||||    
T  48647565 caaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctct 48647485  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 21561921 - 21561874
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcaca 194  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||||||    
T  21561921 atgagcaaatggtcactttagtccctgactctgcacatcgctgtcaca 21561874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 22681606 - 22681697
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | |||||||||||||||||||||||| |  ||||| ||   |||||||   |||||||||||||||| |||||||||    
T  22681606 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaaagccaaagataccgaatttgacgagagccataaaaaagaatccagcttcac 22681697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 8374930 - 8374996
Alignment:
Q  167 gtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    |||||||||||||||| |||||||||||||||||  ||| | || |||||||||||| |||| ||||    
T  8374930 gtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctg 8374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 38889842 - 38889788
Alignment:
Q  28 gatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaa 82  Q
    ||||| |||||||| ||||||||| | |||||| |||||||||||||||||||||    
T  38889842 gatacccatacaaaatagtggatatcgccaccagtcatgaaaaccaaacggaaaa 38889788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 42477393 - 42477459
Alignment:
Q  163 tttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||||||| ||||||||||| ||| |||| ||||||||  ||| | |||||||||||||||||||||    
T  42477393 tttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc 42477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 45583685 - 45583761
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagt 228  Q
    ||||| |||||||| |||||||| ||||||  ||||| |||||||||||| ||| | || |||||||||| ||||||    
T  45583685 caaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagt 45583761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 48777257 - 48777345
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| ||| |||| ||||||  ||||||||||||| |||| ||| | | |||||||||||||||| || ||| ||||||    
T  48777257 caaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgc 48777345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 6459014 - 6458923
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | ||||||||||||||||||||||||||  |  |  |||| || ||||  |||||||||||||||||| | ||||||    
T  6459014 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaacgccatcgttacaaaatatgacgaaagccataaaaaagaatttaacttcac 6458923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 7567110 - 7567201
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| |  |||||||||||||||| |  |||||  || |  ||| ||||||||  |||||||||||||||||||||||||||    
T  7567110 atacaaagaagtgggtgtctccaccaatcatgaagaggaaacgccaatggtacaccatttgacgaaagccataaaaaagaattcagcttcac 7567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 13428108 - 13428163
Alignment:
Q  27 tgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaa 82  Q
    |||||| ||||||||  |||||||| | |||||||||||||||| |||||||||||    
T  13428108 tgatacccatacaaaaaagtggatatcgccaccaatcatgaaaatcaaacggaaaa 13428163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 7259774 - 7259720
Alignment:
Q  184 tcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    |||||||||||| ||||  ||||| ||||||||||||||||||||| ||| ||||    
T  7259774 tcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactct 7259720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 43656042 - 43656001
Alignment:
Q  34 catacaaagtagtggatacctccaccaatcatgaaaaccaaa 75  Q
    ||||||||| |||||||  |||||||||||||||||||||||    
T  43656042 catacaaaggagtggatgtctccaccaatcatgaaaaccaaa 43656001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 45140297 - 45140334
Alignment:
Q  45 gtggatacctccaccaatcatgaaaaccaaacggaaaa 82  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  45140297 gtggatatcgccaccaatcatgaaaaccaaacggaaaa 45140334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 34704911 - 34704991
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    |||| |||||||| ||| | |||||||||| ||| ||||||| ||| |  ||| | ||||||||||||||| |||||||||    
T  34704911 aaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctg 34704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 25026885 - 25026974
Alignment:
Q  34 catacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagctt 123  Q
    |||||||  ||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||    
T  25026885 catacaagatagtggatatctccaccaatcataaaaaccaaacggaagagaaataacatttgacgaaagccataaaaaagaattcagctt 25026974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 30747995 - 30748086
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||| ||| | ||||||||||||||| ||||||||| ||||    
T  30747995 atgagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactct 30748086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 31218956 - 31219032
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagt 228  Q
    ||||| ||||||||  || |||||||||||| |||||||||||||||||||| | | ||||||||||||||| ||||    
T  31218956 caaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagt 31219032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 31219286 - 31219206
Alignment:
Q  148 tgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagt 228  Q
    |||| |||| ||||||||  ||||||||||||||| ||||||||||||||||| || | | ||||||||||||||| ||||    
T  31219286 tgaaaaaatggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagt 31219206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 6468902 - 6468822
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    |||| ||||||||| ||  |||||||||| |||||||||||| |||||| ||| | | |||||||||||||  ||||||||    
T  6468902 aaatggtcactttgttctttgactctgcatatcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtctctg 6468822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 35178926 - 35178849
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| | |||||||||||||||||||||    
T  35178926 caaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtc 35178849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 32898572 - 32898479
Alignment:
Q  147 atgaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| ||||| |||||||| |||||||||||||||  || ||||||||||||||| ||| | ||||||||||||||||||||| ||| ||||||    
T  32898572 atgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgc 32898479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 29934615 - 29934516
Alignment:
Q  27 tgatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||| ||||||| ||||||| || ||||||||||| || || ||||||| || ||  ||||||||||||  |||||||||||||||||||| ||||||    
T  29934615 tgatacccatacaaggtagtgggtatctccaccaatcgtggaagccaaacgaaagaggcacaacatttgacgaaagccataaaaaagaattcaacttcac 29934516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 15353272 - 15353181
Alignment:
Q  34 catacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttca 125  Q
    ||||||||| ||||| || |||||||||||||||||||||||||  |||| || |||||| ||   ||||||||||||||| |||| |||||    
T  15353272 catacaaagaagtgggtatctccaccaatcatgaaaaccaaacgataaaggaataacattcgaagaaagccataaaaaagagttcaacttca 15353181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 35177396 - 35177484
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||| ||| |||||| | ||||||  |||||||||||||||||| ||| |  |||||||||||||||||||| ||| ||||||    
T  35177396 caaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgc 35177484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 17936247 - 17936156
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||||| |||||| |||||||||| | ||||||| || |  ||| | ||||||  ||||||||||||||| |||||||||||    
T  17936247 atacaaagaagtggatgcctccatcaatcatgaagagcaaacggcaatggtacaccgtttgacgaaagccataaaaaagagttcagcttcac 17936156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 41753999 - 41754085
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctct 238  Q
    ||||| |||||||| |||||||  ||||||| | |||||||||||||||| ||| | ||||||||||| ||| ||||| ||| ||||    
T  41753999 caaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactct 41754085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 10407706 - 10407629
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||| ||| |||| ||||||  || |||||||||||||| |||| | ||||||||| |||||||||||    
T  10407706 caaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtc 10407629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 36032708 - 36032747
Alignment:
Q  153 aaattgtcactttggtccctgactctgcacatcgctgtca 192  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  36032708 aaattgtcactttgatctctgactctgcacatcgctgtca 36032747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 39919459 - 39919509
Alignment:
Q  28 gatacacatacaaagtagtggatacctccaccaatcatgaaaaccaaacgg 78  Q
    ||||| ||||||||  |||||||| | ||||||||||||||||||||||||    
T  39919459 gatacccatacaaaagagtggatatcgccaccaatcatgaaaaccaaacgg 39919509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 45476207 - 45476251
Alignment:
Q  196 aggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||||| ||||| || |||||||||||||||||||||| ||||||    
T  45476207 aggtccatgattcagaattaaatacaaataagtctctgactctgc 45476251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 7945665 - 7945595
Alignment:
Q  163 tttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    |||||||||||||||||||| |||||||||||||||| | ||| | |||||||||||||||||||||||||    
T  7945665 tttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctg 7945595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 10332987 - 10333064
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||| |||||||||| ||||| ||| |||||||||||||||||||| ||||||||||| |||||||||    
T  10332987 caaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtc 10333064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 52440674 - 52440593
Alignment:
Q  159 tcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| |||||| |||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||||    
T  52440674 tcacattggtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgc 52440593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 5782415 - 5782496
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||  ||| | | ||||||||||||| |||||||||    
T  5782415 caaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctg 5782496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 32665892 - 32665804
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    ||||| |||||||| |||||||| ||||||  |||||||||||||||||  ||| | | |||||||||||||||||||| || ||||||    
T  32665892 caaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgc 32665804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 6612417 - 6612508
Alignment:
Q  149 gaacaaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||||||| |||||||| |||||||||||||||| ||||||| | | | |||  ||| | | ||||||||||||| ||||||||| ||||||    
T  6612417 gaacaaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgc 6612508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 534656 - 534602
Alignment:
Q  175 ctctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    |||||||| ||||||| |||||||| ||||||| ||||||||||||||| |||||    
T  534656 ctctgcacctcgctgttacataggttcttgattcaggattaaatacaaacaagtc 534602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 52439480 - 52439560
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctct 232  Q
    ||||| |||||||| | |||||| ||||||  |||||||||||||||||  ||  | ||||||||||||| ||||||||||    
T  52439480 caaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtctct 52439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 9341109 - 9341066
Alignment:
Q  190 tcacataggtccttgattgaggattaaatacaaataagtctctg 233  Q
    |||||||||||| ||| | |||||||||||||||||||||||||    
T  9341109 tcacataggtccctgactcaggattaaatacaaataagtctctg 9341066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 24509475 - 24509566
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaacggaaaagaaacaacatttgaccgaagccataaaaaagaattcagcttcac 126  Q
    |||||||| ||||| | |||||||||||||||||||||||| |  ||||  |||  |||||||   |||||||||||||||| || ||||||    
T  24509475 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaatgccaaagttacagaatttgacgagagccataaaaaagaatccatcttcac 24509566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 9339647 - 9339721
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataa 226  Q
    ||||| ||| |||| |||||||| ||||||  ||| ||| |||||||||| ||| | ||||||||||||||||||    
T  9339647 caaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataa 9339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 10333289 - 10333220
Alignment:
Q  171 ctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctctgtctctgc 240  Q
    |||| ||||||  ||||||| |||||||||  ||| | | ||||||||||||||||||||||| ||||||    
T  10333289 ctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgc 10333220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 33567306 - 33567347
Alignment:
Q  34 catacaaagtagtggatacctccaccaatcatgaaaaccaaa 75  Q
    ||||||||| |||||||  |||||||||||||||||||||||    
T  33567306 catacaaaggagtggatgtctccaccaatcatgaaaaccaaa 33567347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 22856681 - 22856761
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtctct 232  Q
    ||||| |||||||| ||| ||||||||||||  || ||| ||| || | ||||| | ||||||||||||||| ||||||||    
T  22856681 caaatggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctct 22856761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 34088583 - 34088535
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtc 200  Q
    |||||||||||||| |||||||||||| ||  ||||||||||| |||||    
T  34088583 caaattgtcactttagtccctgactctacatctcgctgtcacaaaggtc 34088535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 79074 - 79151
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||| ||| || ||||||||||||| |||||||||||||||||||||| | | ||||||||| ||| |||||    
T  79074 caaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtc 79151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 116056 - 116133
Alignment:
Q  152 caaattgtcactttggtccctgactctgcacatcgctgtcacataggtccttgattgaggattaaatacaaataagtc 229  Q
    ||||| |||||||| || ||| | ||||||  |||||||||||||||||| ||| | |||||||||||||||||||||    
T  116056 caaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 116133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 1226 - 1267
Alignment:
Q  35 atacaaagtagtggatacctccaccaatcatgaaaaccaaac 76  Q
    |||||||| ||||| | |||||||||||||||||||||||||    
T  1226 atacaaagaagtgggtgcctccaccaatcatgaaaaccaaac 1267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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