View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_17 (Length: 532)
Name: NF3772_low_17
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 13 - 516
Target Start/End: Original strand, 55341772 - 55342275
Alignment:
| Q |
13 |
gagatggatttccaagcaagacttgccatgcttggcgcagcnnnnnnnnnnnnntaagctggccttagcactacaggaaactgattactacttgttagac |
112 |
Q |
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| T |
55341772 |
gagatggatttccaagcaagacttgccatgcttggtgcagcaaaaaacaaaaaataagctggccttagcactacaggaaactgattactacttgttagac |
55341871 |
T |
|
| Q |
113 |
gctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgttccaaccaatttctgtcataacttgagc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55341872 |
gctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgttccaaccaatttcagtcataacttgagc |
55341971 |
T |
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| Q |
213 |
agccaccaagttccctataacagaaaccaggttgacagggtttgctactactgatagaaacctcttttcagtagtgaaccattgtccaaaaagttttaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55341972 |
agccaccaagttccctataacagaaaccaggttgacagggtttgctactactgacagaaacctcttttcagtagtgaaccattgtccaaaaagttttaca |
55342071 |
T |
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| Q |
313 |
tcaagcagaaatattacaaaagaaaaggctagacaaagaaactcatagtaacaagttctcgaaacaatccaaggcggtgatgcttgaagcatgagaagat |
412 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55342072 |
tcaagcagaaatattacaaaagaaaatgctagacaaagaaactcatagtaacaagttctcgaaacaatccaaggcggtgatgcttgcagcatgagaagat |
55342171 |
T |
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| Q |
413 |
atgaaatccaaggagtatacatgtaattaactccaatatgatgtgcaaactcatcattcactgcattaaagtgcaagatggacttgagcatataaagaaa |
512 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55342172 |
atgaaatccaaggagtatacatgtagttaactccaatatgatgtgcaaactcatcattcactgcattaaagtgcaagatggacttgagcatataaagaaa |
55342271 |
T |
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| Q |
513 |
agac |
516 |
Q |
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|||| |
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| T |
55342272 |
agac |
55342275 |
T |
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