View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_172 (Length: 242)
Name: NF3772_low_172
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_172 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 8163672 - 8163443
Alignment:
| Q |
11 |
acatcatccaaaacgtattaaaacaagtacgctataatttcaatatattggaacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcac |
110 |
Q |
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| T |
8163672 |
acatcatacataacgtattaaaacaagtgcgctagaatttcaatatatgggaacaagttgggcaagtctgaaaa--tgttgctagtaatgttggattcac |
8163575 |
T |
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| Q |
111 |
caatttccatcaaatactattgttgtgcatcgcaattgtcgcgacattgtgtggccgaattcaggagaaaactctggtcctgctccggaattgagtgagt |
210 |
Q |
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| T |
8163574 |
caatttccatcaaacactattgttgtgcatctcaattgtcgcgacattgtgtggctgaattcaggaaaaaactctggtcctgctccggaattgagtgagt |
8163475 |
T |
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| Q |
211 |
aacttctaagctaaactgcgtttcaaaaggac |
242 |
Q |
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| T |
8163474 |
aacttctaagctaaactgcgtttcaaaaggac |
8163443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 7316323 - 7316500
Alignment:
| Q |
62 |
aacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatcaaatactattgttgtgcatcgcaattgtcgcgacattgtg |
161 |
Q |
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| T |
7316323 |
aacaagttgggcaagtctgaaaaattgttgcttttaatgttggattcaccaatttccatccaatg---ttgttgtgcatcgcaattgtcgcgacattgtg |
7316419 |
T |
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| Q |
162 |
tggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggac |
242 |
Q |
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| T |
7316420 |
tggctgaattcaggagaaaactctggtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggac |
7316500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 7219724 - 7219547
Alignment:
| Q |
62 |
aacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatcaaatactattgttgtgcatcgcaattgtcgcgacattgtg |
161 |
Q |
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| T |
7219724 |
aacaagttgggcaagtcagaaaaaatgttgctaataatgtaggattcaccaatttccaaccaatgat---gttgtgcatcgcaattgtcgcgacattgtg |
7219628 |
T |
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| Q |
162 |
tggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggac |
242 |
Q |
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| T |
7219627 |
tggctgaattcaggagaaaactctggtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggac |
7219547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 25943 - 25984
Alignment:
| Q |
11 |
acatcatccaaaacgtattaaaacaagtacgctataatttca |
52 |
Q |
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| T |
25943 |
acatcatacagaacgtattaaaacaagtacgctagaatttca |
25984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 19633777 - 19633736
Alignment:
| Q |
11 |
acatcatccaaaacgtattaaaacaagtacgctataatttca |
52 |
Q |
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| T |
19633777 |
acatcatgcaaaacatattaaaacaagtacgctagaatttca |
19633736 |
T |
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