View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_175 (Length: 241)
Name: NF3772_low_175
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_175 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 17493773 - 17493541
Alignment:
| Q |
6 |
ttttacctcgagtacaccttgttgtgccactaatcttccagcagctgtggttgcagccccagatagaaagctagagtgttgaaaagcacccttttgtttc |
105 |
Q |
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| T |
17493773 |
ttttacctcgagtacaccttgttgtgccactaatcttccagcagctgtggttgcagccccagatagaaagctagagtgttgaaaagcacccttttgtttc |
17493674 |
T |
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| Q |
106 |
cttccaacatacaaagccctagtggtgctaagaacaaatatccatttagacttttcatcagtctccacaaatttcccatcttttctatacaccaactttc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17493673 |
cttccaacatacaaagccctagtggtgctaagaacaaatatccatttggacttttcatcggtctccacaaatttcccatcttttctatacaccaactttc |
17493574 |
T |
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| Q |
206 |
ccttttcaacaattacttcatattcttcccttt |
238 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17493573 |
ccttttcaacaattacttcatattcttcccttt |
17493541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 52368030 - 52368259
Alignment:
| Q |
9 |
tacctcgagtacaccttgttgtgccactaatcttccagcagctgtggttgcagccccagatagaaagctagagtgttgaaaagcacccttttgtttcctt |
108 |
Q |
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|||||| || |||||||| | ||| |||||||| ||||| || ||||||||| | |||| |||||||| || |||||||| ||||||||||| || | |
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| T |
52368030 |
tacctcaagaacaccttgatttgctactaatctaccagctgcggtggttgcaccaccagcaagaaagcttgaatgttgaaaggcacccttttgctttttc |
52368129 |
T |
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| Q |
109 |
ccaacatacaaagccctagtggtgctaagaacaaatatccatttagacttttcatcagtctccacaaatttcccatcttttctatacaccaactttccct |
208 |
Q |
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|| || ||||| || || || || || ||||||||||||||||| || || |||||||| ||||| ||||||||| | ||||||||||| |||||| |
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| T |
52368130 |
cccacgtacaaggctcttgtagtactgagaacaaatatccattttgatttctcatcagtactcacaagcctcccatcttgtttatacaccaaccttccct |
52368229 |
T |
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| Q |
209 |
tttcaacaattacttcatattcttcccttt |
238 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
52368230 |
tttcaacaattacttcatattcttctcttt |
52368259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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