View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_176 (Length: 240)
Name: NF3772_low_176
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_176 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 12264563 - 12264343
Alignment:
| Q |
20 |
gtaaatctaggactatgttgtcttggtgttttcgaagtgcaagggaagtggacgtaatcccagattatgaggtgaatgaatcagaataaatactttgtat |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12264563 |
gtaaatctaggactatgttgtcttagtgttttcgaagtgcaagggaagtggacgtaatcccagattatgaggtgaatgaatcagaataaatactttgtat |
12264464 |
T |
|
| Q |
120 |
caactcttatctttgtattttacgctgctatccattttccagtatcataaaaggagaataagaaagagaccaacacaattcaaaccttcatttattgtgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
12264463 |
caactcttatctttgtattttacgctgctatccattttccagtatcataaaaggagaataagaaagagaccaacacaattcaaacctttatttgttgtgt |
12264364 |
T |
|
| Q |
220 |
ttttctcatcttcacaaattc |
240 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
12264363 |
ttttctcaccttcacaaattc |
12264343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 25069914 - 25069872
Alignment:
| Q |
53 |
gaagtgcaagggaagtggacgtaatcccagattatgaggtgaa |
95 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
25069914 |
gaagtgcaagggaactggacgtaaccccatattatgaggtgaa |
25069872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 17418448 - 17418491
Alignment:
| Q |
190 |
caacacaattcaaaccttcatttattgtgtttttctcatcttcac |
234 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
17418448 |
caacacaattcaa-ccttcctttcttgtgtttttctcatcttcac |
17418491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University