View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_178 (Length: 240)
Name: NF3772_low_178
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_178 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 22121567 - 22121344
Alignment:
| Q |
19 |
cgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggagagttaacttcccaggctgataacga |
118 |
Q |
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| T |
22121567 |
cgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggagagttaacttcccaggctgataacga |
22121468 |
T |
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| Q |
119 |
tggtactacttatttaccattgagttgaggctcacc--nnnnnnnnggttttataatcaaattgaataaaccatcaatttagtccttataaactatcact |
216 |
Q |
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| T |
22121467 |
tggtactacttatttaccattgagttgaggctcaccttttttttttggttttataatcaaattgaataaaccatcaatttagtccttataaactatcact |
22121368 |
T |
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| Q |
217 |
cactctataatttagttagtcctt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
22121367 |
cactctataatttagttagtcctt |
22121344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 40512906 - 40513129
Alignment:
| Q |
19 |
cgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggagagttaacttcccaggctgataacga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512906 |
cgtatgataaggctgctataaaatgcaatggaagggaagcagttacaaattttgaggctagttcttatgaaggagagttaacttcccaggctgataacga |
40513005 |
T |
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| Q |
119 |
tggtactacttatttaccattgagttgaggctcacc--nnnnnnnnggttttataatcaaattgaataaaccatcaatttagtccttataaactatcact |
216 |
Q |
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| T |
40513006 |
tggtactacttatttaccattgagttgaggctcaccttttttttttggttttataatcaaattgaataaaccatcaatttagtccttataaactatcact |
40513105 |
T |
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| Q |
217 |
cactctataatttagttagtcctt |
240 |
Q |
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| T |
40513106 |
cactctataatttagttagtcctt |
40513129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 32175430 - 32175395
Alignment:
| Q |
180 |
gaataaaccatcaatttagtccttataaactatcact |
216 |
Q |
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| T |
32175430 |
gaataaaccatcaatttagtcctt-taaactatcact |
32175395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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