View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_18 (Length: 524)
Name: NF3772_low_18
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 38129504 - 38130008
Alignment:
| Q |
1 |
acataaacatttcatctttgataaacaaatttataattcgaaatcaagtaaatattttagtcgaaaaaattggtattttttgcaacaaatacatgtttga |
100 |
Q |
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| T |
38129504 |
acataaacatttcatctttgataaacaaatttataattcgaaatcaagtaaatattttagttgaaaaaattggtattttttgcaacaaatacatgtttga |
38129603 |
T |
|
| Q |
101 |
agagcaatggtcaatgaatgaaagtgaaagctatacttcagcctcctctatgaatcaattgcacgcataatttatactagagtcaaaccatgtcaagtac |
200 |
Q |
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| T |
38129604 |
agagaaatggtcaatgaatgaaagtgaaagctatacttcagcctcctctatgaatcaattgcacgcataatttatactagagtcaaaccatgtcaagtac |
38129703 |
T |
|
| Q |
201 |
aagtaacgctggttcctttccatgtgcatgtagccgtagtggtnnnnnnnnt-ctcaaacacaagtgtgcatatatcaatcataagataaatttaaataa |
299 |
Q |
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| T |
38129704 |
aagtaaagctggttcctttccatgtgcatgtagacgtagtggtaaaaaaaattctcaaacacaagtgtgcatatattaatcataagataaatttaaataa |
38129803 |
T |
|
| Q |
300 |
tttatacgtaaatatttccaatttccaaatgcatatataaaatgcaatgactgaaacacatttggctttcacagtcattgttaacgaaattgttgagcac |
399 |
Q |
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| T |
38129804 |
tttatacgtaaatttttccaatttccaaatgcatatataaaatgcaatgactgaaacacatttggctttcacagtcattgttaacgaaattgttgagcac |
38129903 |
T |
|
| Q |
400 |
atttcacttagcttcataatgctattattattgataagtaagcactacgtgatgggggaaagtgattttccttacttgccaccaccagtacacgatatga |
499 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38129904 |
atttcacttagcttcataatgctattcttattgataagtaagcactacgtgatgggtgaaagtgattttccttacttgccaccacaagtacacgatatga |
38130003 |
T |
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| Q |
500 |
catag |
504 |
Q |
| |
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||||| |
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| T |
38130004 |
catag |
38130008 |
T |
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