View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_180 (Length: 239)
Name: NF3772_low_180
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_180 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 44236441 - 44236224
Alignment:
| Q |
1 |
cacaatcaacataaatccaaattaagatttaagagagactccaacttaaattaaccccaattgaataatataaagaatttgtttttaccttccattgcta |
100 |
Q |
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| T |
44236441 |
cacaataaacataaatccaaattaagatttaagagagactccaacttaaattaaccccaattgaataatataaagaatttgtttttaccttccattgcta |
44236342 |
T |
|
| Q |
101 |
atctcatttttggcaatgaatccaaaaaagggaccttgatctgcagcttgttcaagcttcttctttttgaaatattcctgcaattccttagccttttgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236341 |
atctcatttttggcaatgaatccaaaaaagggaccttgatctgcagcttgttcaagcttcttctttttgaaatattcctgcaattccttagccttttgtc |
44236242 |
T |
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| Q |
201 |
tctgaaactctaacgaaa |
218 |
Q |
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|||||||||||||||||| |
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| T |
44236241 |
tctgaaactctaacgaaa |
44236224 |
T |
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