View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_181 (Length: 239)
Name: NF3772_low_181
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_181 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 43531592 - 43531388
Alignment:
| Q |
14 |
cagagaagaaaaagctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacagtggggagcaagttggattgaaca |
113 |
Q |
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| T |
43531592 |
cagagaagaaaaagctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacaatggggagcaagttggattgaaca |
43531493 |
T |
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| Q |
114 |
atttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttgga |
213 |
Q |
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| T |
43531492 |
atttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttgga |
43531393 |
T |
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| Q |
214 |
ttact |
218 |
Q |
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||||| |
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| T |
43531392 |
ttact |
43531388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 24128170 - 24128307
Alignment:
| Q |
81 |
taaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatc |
180 |
Q |
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| T |
24128170 |
taaaagacaatggggagcaagatgggatgaacaattttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatc |
24128269 |
T |
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| Q |
181 |
acacaagttctttccactgctgtcatccttggattact |
218 |
Q |
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| T |
24128270 |
acacaagttttatccactgcaatcatcttaggattact |
24128307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 24145936 - 24146054
Alignment:
| Q |
82 |
aaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatca |
181 |
Q |
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| T |
24145936 |
aaaagacaatggggagcaagttgggatgaacaattttccatacttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatca |
24146035 |
T |
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| Q |
182 |
cacaagttctttccactgc |
200 |
Q |
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|||||||| | |||||||| |
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| T |
24146036 |
cacaagttttatccactgc |
24146054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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