View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_182 (Length: 239)

Name: NF3772_low_182
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_182
NF3772_low_182
[»] chr5 (6 HSPs)
chr5 (8-229)||(42518688-42518903)
chr5 (123-202)||(42509329-42509411)
chr5 (62-126)||(687293-687353)
chr5 (64-108)||(8040252-8040296)
chr5 (64-108)||(15183964-15184008)
chr5 (64-108)||(33002763-33002807)
[»] chr4 (17 HSPs)
chr4 (12-108)||(36864874-36864965)
chr4 (64-108)||(9939179-9939223)
chr4 (20-109)||(17648053-17648136)
chr4 (40-126)||(36451356-36451432)
chr4 (28-108)||(38143545-38143620)
chr4 (65-108)||(25970162-25970205)
chr4 (18-108)||(29650472-29650557)
chr4 (64-109)||(36865664-36865709)
chr4 (64-109)||(39522431-39522476)
chr4 (64-108)||(9939318-9939362)
chr4 (64-108)||(11417744-11417788)
chr4 (64-108)||(11417884-11417928)
chr4 (64-108)||(11806148-11806192)
chr4 (64-108)||(21166322-21166366)
chr4 (64-108)||(26610402-26610446)
chr4 (64-108)||(26611230-26611274)
chr4 (64-108)||(38143684-38143728)
[»] chr1 (6 HSPs)
chr1 (40-108)||(47334256-47334318)
chr1 (64-126)||(23440660-23440718)
chr1 (64-108)||(48972392-48972436)
chr1 (64-108)||(50827038-50827082)
chr1 (64-108)||(16270264-16270308)
chr1 (64-108)||(16271095-16271139)
[»] chr3 (10 HSPs)
chr3 (12-108)||(19132710-19132803)
chr3 (64-109)||(38922799-38922844)
chr3 (28-108)||(19132620-19132695)
chr3 (64-108)||(44686311-44686355)
chr3 (39-108)||(45500530-45500593)
chr3 (64-108)||(3971049-3971093)
chr3 (64-108)||(3998788-3998832)
chr3 (64-108)||(32490142-32490186)
chr3 (64-108)||(45242123-45242167)
chr3 (64-108)||(52492226-52492270)
[»] chr6 (6 HSPs)
chr6 (28-109)||(22579991-22580067)
chr6 (28-108)||(3542979-3543054)
chr6 (64-108)||(7193395-7193439)
chr6 (64-108)||(15082454-15082498)
chr6 (64-108)||(33018224-33018268)
chr6 (64-108)||(33480575-33480619)
[»] chr2 (5 HSPs)
chr2 (64-109)||(14573946-14573991)
chr2 (12-108)||(4479602-4479693)
chr2 (64-109)||(21471901-21471946)
chr2 (64-108)||(37548055-37548099)
chr2 (64-108)||(38834444-38834488)
[»] scaffold0700 (1 HSPs)
scaffold0700 (69-109)||(5375-5415)
[»] scaffold0041 (1 HSPs)
scaffold0041 (64-108)||(27278-27322)
[»] chr7 (4 HSPs)
chr7 (64-108)||(37864254-37864298)
chr7 (64-108)||(4261262-4261306)
chr7 (64-108)||(17145679-17145723)
chr7 (64-108)||(38071955-38071999)
[»] scaffold0332 (1 HSPs)
scaffold0332 (64-108)||(9205-9249)
[»] chr8 (2 HSPs)
chr8 (64-108)||(5035223-5035267)
chr8 (64-108)||(34992211-34992255)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 42518903 - 42518688
Alignment:
Q  8 gtgtgacatgaaagagaggatgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgg 107  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  42518903 gtgtgacatgaaagagagggtgaaaaatagtataaaacaataatttagtgttgagat------agtacgataagaatttgtttctcatttaatctaatgg 42518810  T
Q  108 atggacataatcaacttttgaataatttgatattgtagaaattgatgctagttgagataaatttttactataatttacgataaattgagtagtaacgtaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42518809 atggacataatcaacttttgaataatttgatattgtagaaattgatgctagttgagatagatttttactataatttacgataaattgagtagtaacgtaa 42518710  T
Q  208 ctagtaagtaggctgatgatgt 229  Q
     |||||||||||||||||||||    
T  42518709 atagtaagtaggctgatgatgt 42518688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 42509411 - 42509329
Alignment:
Q  123 ttttgaataatttgatattgtagaaattgatgctagttgagata-aattt--ttactataatttacgataaattgagtagtaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||| |||||||||||    
T  42509411 ttttgaataatttgatattgtagaaattgatgctagttgagatagaattttattactataatttgcgataatttgagtagtaa 42509329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 687293 - 687353
Alignment:
Q  62 gattgagagagtacgataagaatttgtttctcatttaatctaatggatggacataatcaactttt 126  Q
    ||||||||||||| |||| |||| |||| |||||||||||||    |||||||||||||||||||    
T  687293 gattgagagagtatgataggaatatgttcctcatttaatcta----atggacataatcaactttt 687353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 8040296 - 8040252
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| | || ||||||||||||||||||    
T  8040296 ttgagagagtatgataagaatatattcctcatttaatctaatgga 8040252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 15183964 - 15184008
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  15183964 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 15184008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 33002763 - 33002807
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  33002763 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 33002807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 36864965 - 36864874
Alignment:
Q  12 gacatgaaagagaggatgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    |||||||||||||| |||||| ||| ||||||| |||||||||||| |     |||||||||| |||| |||| |||||||||||||||||||||||    
T  36864965 gacatgaaagagagtatgaaagatagtataaaaaaataatctagtggt-----tgagagagtatgataggaatatgtttctcatttaatctaatgga 36864874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 9939223 - 9939179
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  9939223 ttgagagagtatgataagaatatgtttctcatttaatctaatgga 9939179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 17648053 - 17648136
Alignment:
Q  20 agagaggatgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    |||||||||| || ||| | |||||||||||| |||||||||      ||||||| ||||||||||| ||||| ||||||||||||||||    
T  17648053 agagaggatggaagatagtgtaaaacaataatatagtgttga------gagagtaagataagaatttatttcttatttaatctaatggat 17648136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 36451356 - 36451432
Alignment:
Q  40 taaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatggatggacataatcaactttt 126  Q
    ||||||||||||||||||||||      ||||||| |||||| |||||||| ||||||||||||    |||||||||||||||||||    
T  36451356 taaaacaataatctagtgttga------gagagtaggataaggatttgtttttcatttaatcta----atggacataatcaactttt 36451432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 38143620 - 38143545
Alignment:
Q  28 tgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||| ||||||||||| |||||||||||| |     |||||||||| |||| |||| |||| ||||||||||||||||||    
T  38143620 tgaaagataatataaaaaaataatctagtggt-----tgagagagtatgataggaatatgttcctcatttaatctaatgga 38143545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 25970205 - 25970162
Alignment:
Q  65 tgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    |||||||||| |||||  ||||||||||||||||||||||||||    
T  25970205 tgagagagtatgataaagatttgtttctcatttaatctaatgga 25970162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 29650557 - 29650472
Alignment:
Q  18 aaagagaggatgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||  ||||| ||| ||||||| |||||||||||| |     |||||||||| |||| |||| |||| ||||||||||||||||||    
T  29650557 aaagagagtgtgaaagatagtataaaaaaataatctagtggt-----tgagagagtatgataggaatatgttcctcatttaatctaatgga 29650472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 36865664 - 36865709
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    ||||||||||| |||| |||| |||| |||||||||||||||||||    
T  36865664 ttgagagagtatgataggaatatgttcctcatttaatctaatggat 36865709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 39522476 - 39522431
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    ||||||||||| |||| |||| |||| |||||||||||||||||||    
T  39522476 ttgagagagtatgataggaatatgttcctcatttaatctaatggat 39522431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 9939318 - 9939362
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  9939318 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 9939362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 11417788 - 11417744
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  11417788 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 11417744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 11417884 - 11417928
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  11417884 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 11417928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 11806192 - 11806148
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||||||    
T  11806192 ttgagagagtaggataaaaatgtgttcctcatttaatctaatgga 11806148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 21166322 - 21166366
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  21166322 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 21166366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 26610446 - 26610402
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  26610446 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 26610402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 26611230 - 26611274
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  26611230 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 26611274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 38143684 - 38143728
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  38143684 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 38143728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 47334318 - 47334256
Alignment:
Q  40 taaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||||||||||||||||      ||||| |||||| ||||||||||||||||||||||||||    
T  47334318 taaaacaataatctagtgttgaga------gagtaggataaggatttgtttctcatttaatctaatgga 47334256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 23440718 - 23440660
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatggatggacataatcaactttt 126  Q
    ||||||||||| |||| |||| |||||||||||||||||||    ||||||||||||||||||    
T  23440718 ttgagagagtatgataggaatatgtttctcatttaatctaa----tggacataatcaactttt 23440660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 48972392 - 48972436
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||    
T  48972392 ttgagagagtatgataggaatatgtttctcatttaatctaatgga 48972436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 50827038 - 50827082
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||||    
T  50827038 ttgagagagtatgataaaaatatgtttctcatttaatctaatgga 50827082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 16270308 - 16270264
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  16270308 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 16270264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 16271095 - 16271139
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  16271095 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 16271139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 19132710 - 19132803
Alignment:
Q  12 gacatgaaagagaggatg--aaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    |||||||||||||| |||  ||| ||||||||||| ||||||| |||| |     |||||||||| ||||||||| |||| ||||||||||||||||||    
T  19132710 gacatgaaagagagaatgtgaaagataatataaaaaaataatccagtggt-----tgagagagtatgataagaatatgttcctcatttaatctaatgga 19132803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 38922844 - 38922799
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||||    
T  38922844 ttgagagagtatgataggaatatgtttctcatttaatctaatggat 38922799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 19132695 - 19132620
Alignment:
Q  28 tgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||| ||||||||||| |||||||||||| |     |||||||||| |||| |||| |||| ||||||||||||||||||    
T  19132695 tgaaagataatataaaaaaataatctagtggt-----tgagagagtatgataggaatatgttcctcatttaatctaatgga 19132620  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 44686355 - 44686311
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||    
T  44686355 ttgagagagtatgataggaatatgtttctcatttaatctaatgga 44686311  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 45500593 - 45500530
Alignment:
Q  39 ataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    |||||||||||||||||||||||||      |||||  |||||||| |||| ||||||||||||||||||    
T  45500593 ataaaacaataatctagtgttgaga------gagtagaataagaatgtgttcctcatttaatctaatgga 45500530  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 3971093 - 3971049
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  3971093 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 3971049  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 3998788 - 3998832
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  3998788 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 3998832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 32490142 - 32490186
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  32490142 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 32490186  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 45242167 - 45242123
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  45242167 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 45242123  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 52492226 - 52492270
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| | || ||||||||||||||||||    
T  52492226 ttgagagagtatgataagaatgtattcctcatttaatctaatgga 52492270  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 22580067 - 22579991
Alignment:
Q  28 tgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    ||||| ||| ||||||| ||||||||||||     |||||||||||| |||| |||| |||| |||||||||||||||||||    
T  22580067 tgaaagatagtataaaaaaataatctagtg-----attgagagagtatgataggaatatgttcctcatttaatctaatggat 22579991  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 3542979 - 3543054
Alignment:
Q  28 tgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||| ||||||||||| |||||||||||| |     |||||||||| |||| |||| |||| ||||||||||||||||||    
T  3542979 tgaaagataatataaaaaaataatctagtggt-----tgagagagtatgataggaatatgttcctcatttaatctaatgga 3543054  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 7193439 - 7193395
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||    
T  7193439 ttgagagagtatgataagaatatgttcctcatttaatctaatgga 7193395  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 15082498 - 15082454
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  15082498 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 15082454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 33018268 - 33018224
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||||||    
T  33018268 ttgagagagtatgataaaaatatgttcctcatttaatctaatgga 33018224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 33480575 - 33480619
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  33480575 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 33480619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 14573946 - 14573991
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||||    
T  14573946 ttgagagagtatgataggaatatgtttctcatttaatctaatggat 14573991  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 4479602 - 4479693
Alignment:
Q  12 gacatgaaagagag--gatgaaaaataatataaaacaataatctagtgttgagattgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||||||  ||||||| ||||||||||| |||||| |||||| ||||      ||||| ||||||||| |||| ||||||||||||||||||    
T  4479602 gacatgaaagagagatgatgaaagataatataaaa-aataatttagtgtggaga------gagtatgataagaatatgttcctcatttaatctaatgga 4479693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 21471901 - 21471946
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    ||||||||||| |||| |||| |||| |||||||||||||||||||    
T  21471901 ttgagagagtatgataggaatatgttcctcatttaatctaatggat 21471946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 37548099 - 37548055
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  37548099 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 37548055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 38834488 - 38834444
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||||||    
T  38834488 ttgagagagtatgataaaaatatgttcctcatttaatctaatgga 38834444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 5415 - 5375
Alignment:
Q  69 agagtacgataagaatttgtttctcatttaatctaatggat 109  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  5415 agagtaggataagaatgtgtttctcatttaatctaatggat 5375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 27322 - 27278
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||    
T  27322 ttgagagagtatgataagaatgtgttcctcatttaatctaatgga 27278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 37864254 - 37864298
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||    
T  37864254 ttgagagagtatgataggaatatgtttctcatttaatctaatgga 37864298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 4261306 - 4261262
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| | || ||||||||||||||||||    
T  4261306 ttgagagagtatgataagaatgtattcctcatttaatctaatgga 4261262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 17145723 - 17145679
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  17145723 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 17145679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 38071999 - 38071955
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  38071999 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 38071955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 9205 - 9249
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| ||||  |||||||||||||||||    
T  9205 ttgagagagtatgataagaatatgttcatcatttaatctaatgga 9249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 5035223 - 5035267
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| ||||||||| | || ||||||||||||||||||    
T  5035223 ttgagagagtatgataagaatgtattcctcatttaatctaatgga 5035267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 34992211 - 34992255
Alignment:
Q  64 ttgagagagtacgataagaatttgtttctcatttaatctaatgga 108  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||    
T  34992211 ttgagagagtatgataggaatatgttcctcatttaatctaatgga 34992255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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