View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_186 (Length: 238)
Name: NF3772_low_186
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_186 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8756137 - 8756358
Alignment:
| Q |
1 |
tcactcggcataagcatttcggaatcgttgtcacgatagtacaggccatcatttgagacatttaatgatggtaagttgtggtttctgtttctgtaagacg |
100 |
Q |
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| T |
8756137 |
tcactcggcataagcatttcggaatcgttgtcacgatagtacaggccatcatttgagacatttgatgatggtaagttgtggtttctgtttctgtaagacg |
8756236 |
T |
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| Q |
101 |
cggcgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacaccatagatatgaacat |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8756237 |
cgacgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaacaaagacaccatagatatgaacat |
8756336 |
T |
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| Q |
201 |
gaagacaacagggacaccaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8756337 |
gaagacaacagggacaccaaat |
8756358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8748586 - 8748807
Alignment:
| Q |
1 |
tcactcggcataagcatttcggaatcgttgtcacgatagtacaggccatcatttgagacatttaatgatggtaagttgtggtttctgtttctgtaagacg |
100 |
Q |
| |
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||||| |||||||||||||| ||||| ||||||| |||||||| ||||||||| |||||||| |||||||||| | | |||||||||||| ||||||| |
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| T |
8748586 |
tcacttggcataagcatttccgaatccttgtcacaatagtacatgccatcattcaagacatttgatgatggtaactcgaggtttctgtttcgataagacg |
8748685 |
T |
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| Q |
101 |
cggcgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacaccatagatatgaacat |
200 |
Q |
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| T |
8748686 |
cgacaaccactcgagcacactcactaatcacgttgccttttggttccaccttgacatagagtgaagaagctagaaagaaagataccatagatatgaacat |
8748785 |
T |
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| Q |
201 |
gaagacaacagggacaccaaat |
222 |
Q |
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||| |||||||| | ||||||| |
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| T |
8748786 |
gaacacaacaggtaaaccaaat |
8748807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 8766162 - 8766377
Alignment:
| Q |
7 |
ggcataagcatttcggaatcgttgtcacgatagtacaggccatcatttgagacatttaatgatggtaagttgtggtttctgtttctgtaagacgcggcga |
106 |
Q |
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||||||||| || | ||||| |||||| | |||||| ||||||||| |||||| | ||||||| | ||| ||||||||||||||||||||||| || |
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| T |
8766162 |
ggcataagctttgcagaatccttgtcagaaaagtacatgccatcattgaagacatctggtgatggtgatttgaggtttctgtttctgtaagacgcgatga |
8766261 |
T |
|
| Q |
107 |
cgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacaccatagatatgaacatgaagac |
206 |
Q |
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| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |
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| T |
8766262 |
caactcgagcaaactcactaatcacattgccttttggttccaccttaacatagagtgaagaacctaaaaagaaagacaccatagatatgaacatgaacac |
8766361 |
T |
|
| Q |
207 |
aacagggacaccaaat |
222 |
Q |
| |
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|||||| ||||||||| |
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| T |
8766362 |
aacaggtacaccaaat |
8766377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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