View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_188 (Length: 238)
Name: NF3772_low_188
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_188 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 16071726 - 16071505
Alignment:
| Q |
17 |
aaatactttattattgtttatttgacattgcagaacgtattccatgcaaagataacaaggattgtaatgacaattggcaactacttgcgtgtaggtttga |
116 |
Q |
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| T |
16071726 |
aaatactttattattgtttatttgacattgcagaacgtattccatgcaaagataacaatgattgtaataacaattggcaactacttgcgtgtaggtttga |
16071627 |
T |
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| Q |
117 |
acgggaagtacctcgatgcattaactcaatttgcaagtgcatgccaatgtaactatcaacatgcaaaataattatatgttacatataatttatttatgtc |
216 |
Q |
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| T |
16071626 |
acgggaagtacctcgatgcattaactcaatttgcaagtgcatgccaatgtgactatcaacatgcaaaataattatatgttacatataatttatttatgtc |
16071527 |
T |
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| Q |
217 |
ataatgttcgtactttaataat |
238 |
Q |
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| T |
16071526 |
ataatgttcgtactttaataat |
16071505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 15813876 - 15813672
Alignment:
| Q |
34 |
ttatttgacattgcagaacgtattccatgcaaagataacaaggattgtaatgacaattggcaactacttgcgtgtaggtttgaacgggaagtacctcgat |
133 |
Q |
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| T |
15813876 |
ttatttgacattgcagtacgtattcattgcaaagatgactttgattgtatagaaaatagactacaagttgggtgtaggcttcaaagagaaaaacctcgat |
15813777 |
T |
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| Q |
134 |
gcattaactcaatttgcaagtgcatgccaatgtaactatcaacatgcaaaataattatatgttacatataatttattt--atgtcataatgttcgtactt |
231 |
Q |
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| T |
15813776 |
gcgttaatttagtttgtaggtgcttgagaaggtaactatcaatatgtaaaataattat--gttacatataatttatttgtatgtcataatgttcgtactt |
15813679 |
T |
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| Q |
232 |
taataat |
238 |
Q |
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| T |
15813678 |
tgataat |
15813672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 16084223 - 16084160
Alignment:
| Q |
177 |
atgcaaaataattatatgttacatataatttatt--tatgtcataatgttcgtactttaataat |
238 |
Q |
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| T |
16084223 |
atgcaaaataattatatgttacatataagttatttgtatgtcataatgttcgtactttgataat |
16084160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Complemental strand, 16054682 - 16054652
Alignment:
| Q |
181 |
aaaataattatatgttacatataatttattt |
211 |
Q |
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| T |
16054682 |
aaaataattatatgttacatataatttattt |
16054652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 16084393 - 16084331
Alignment:
| Q |
118 |
cgggaagtacctcgatgcattaactcaatttgcaagtgcatgccaatgtaactatcaacatgc |
180 |
Q |
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| T |
16084393 |
cgggaaatacctcaatgcattaactcaatttgtaagtgcatgaaagggtaactatcaatatgc |
16084331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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