View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_19 (Length: 504)

Name: NF3772_low_19
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_19
NF3772_low_19
[»] chr3 (2 HSPs)
chr3 (18-494)||(38213980-38214456)
chr3 (18-494)||(38218199-38218675)
[»] chr8 (5 HSPs)
chr8 (260-494)||(42991291-42991523)
chr8 (260-453)||(35017979-35018172)
chr8 (18-159)||(42991073-42991214)
chr8 (50-177)||(35017772-35017899)
chr8 (355-396)||(33811108-33811149)
[»] chr7 (5 HSPs)
chr7 (308-437)||(37188902-37189031)
chr7 (365-426)||(32715057-32715118)
chr7 (365-426)||(32709835-32709896)
chr7 (47-123)||(37188619-37188695)
chr7 (365-426)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (365-429)||(10411404-10411468)
chr6 (365-429)||(10379762-10379826)
[»] chr4 (10 HSPs)
chr4 (307-423)||(53492975-53493091)
chr4 (308-423)||(53499268-53499383)
chr4 (324-397)||(53495378-53495451)
chr4 (329-415)||(53488672-53488758)
chr4 (326-396)||(53502408-53502478)
chr4 (20-103)||(53494999-53495082)
chr4 (20-123)||(53498957-53499060)
chr4 (24-121)||(53502099-53502196)
chr4 (74-141)||(52590785-52590852)
chr4 (308-423)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (329-420)||(16942656-16942747)
chr2 (329-420)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (355-396)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 38214456 - 38213980
Alignment:
Q  18 agttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcga 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214456 agttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcga 38214357  T
Q  118 cccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214356 cccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaatt 38214257  T
Q  218 atgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattg 317  Q
    |||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214256 atgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattg 38214157  T
Q  318 gtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214156 gtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtc 38214057  T
Q  418 caaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214056 caaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 38213980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 38218675 - 38218199
Alignment:
Q  18 agttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcga 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218675 agttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcga 38218576  T
Q  118 cccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218575 cccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaatt 38218476  T
Q  218 atgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattg 317  Q
    |||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218475 atgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattg 38218376  T
Q  318 gtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218375 gtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtc 38218276  T
Q  418 caaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218275 caaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 38218199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 260 - 494
Target Start/End: Original strand, 42991291 - 42991523
Alignment:
Q  260 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 359  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||    
T  42991291 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa 42991390  T
Q  360 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 459  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42991391 gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 42991490  T
Q  460 tgagttatcttctgtctcttccacttccttctctg 494  Q
    ||| |||||  ||||||||||||||||||||||||    
T  42991491 tgaattatc--ctgtctcttccacttccttctctg 42991523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 260 - 453
Target Start/End: Original strand, 35017979 - 35018172
Alignment:
Q  260 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 359  Q
    |||||||| |||||||| ||||  ||||||||| | |||||||||| |||||| |||||| |||| || ||||||||||||||||||||||||||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  360 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaa 453  Q
    | || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttcaa 35018172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 42991073 - 42991214
Alignment:
Q  18 agttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcga 117  Q
    ||||||| ||||||||||| ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42991073 agttcttgggaaatgttagcggtaatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggtttga 42991172  T
Q  118 cccaaccaagaacttccacacttactctatcatctggaagcc 159  Q
     || ||||||||||||||||||||||||||||||||||||||    
T  42991173 tcccaccaagaacttccacacttactctatcatctggaagcc 42991214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 35017772 - 35017899
Alignment:
Q  50 attctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatca 149  Q
    ||||| ||||||||| | ||  ||||||| ||||| || |||||||||||||||||||| ||||| ||||| || |  ||||||||||||||||| ||||    
T  35017772 attcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaacaattctacctatggtttgaccccactagaaacttccacacttactccatca 35017871  T
Q  150 tctggaagccacaacacattatgtaagt 177  Q
    | ||||| || |||||||| ||||||||    
T  35017872 tttggaaaccccaacacatcatgtaagt 35017899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 33811149 - 33811108
Alignment:
Q  355 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 396  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  33811149 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 33811108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 308 - 437
Target Start/End: Original strand, 37188902 - 37189031
Alignment:
Q  308 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 407  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | || || |    
T  37188902 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaaga 37189001  T
Q  408 ctgattggtccaaagcaccctttacagctt 437  Q
    | ||||||||||| || || ||||| ||||    
T  37189002 cagattggtccaatgctccttttactgctt 37189031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 32715057 - 32715118
Alignment:
Q  365 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 426  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcacc 32715118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 32709835 - 32709896
Alignment:
Q  365 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 426  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 32709896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 37188619 - 37188695
Alignment:
Q  47 tacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcgacccaac 123  Q
    |||||||| ||||| || ||||||   ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||    
T  37188619 tacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaattctacctatggtttgacccaac 37188695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 32718435 - 32718496
Alignment:
Q  365 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 426  Q
    |||||||| ||||||||||| ||||| ||||| || |  |||||||||||||| ||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcacc 32718496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 10411404 - 10411468
Alignment:
Q  365 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 429  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  10411404 tggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcaccctt 10411468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 10379826 - 10379762
Alignment:
Q  365 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 429  Q
    |||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcaccctt 10379762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 53492975 - 53493091
Alignment:
Q  307 tgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaa 406  Q
    |||||||| |||  |||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || ||     
T  53492975 tgaatcaagtggcgttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaag 53493074  T
Q  407 actgattggtccaaagc 423  Q
    || ||||||||||||||    
T  53493075 acagattggtccaaagc 53493091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 423
Target Start/End: Original strand, 53499268 - 53499383
Alignment:
Q  308 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 407  Q
    ||||||| |||| | |||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || || |    
T  53499268 gaatcaaatggtgtaccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaaga 53499367  T
Q  408 ctgattggtccaaagc 423  Q
    | ||||||||||||||    
T  53499368 cagattggtccaaagc 53499383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 53495378 - 53495451
Alignment:
Q  324 cattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggt 397  Q
    |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||    
T  53495378 catttccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 415
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  329 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 415  Q
    |||||||| || ||||||||| | ||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  326 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtgg 396  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 53494999 - 53495082
Alignment:
Q  20 ttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattc 103  Q
    |||||||| ||||| ||||| || || |||| ||| ||||| || ||||||| |||||| |||||||| |||||||||||||||    
T  53494999 ttcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaacaattc 53495082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 53498957 - 53499060
Alignment:
Q  20 ttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcgacc 119  Q
    ||||| |||||| | ||||| ||||| ||||| || ||||| || ||||||   ||||||||||| |||||||| |||||||| ||||| ||||| ||||    
T  53498957 ttcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtttagccaaggcaaaggtaacagagagcaacaattttacctttggtttgacc 53499056  T
Q  120 caac 123  Q
    ||||    
T  53499057 caac 53499060  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 53502099 - 53502196
Alignment:
Q  24 taggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcgaccca 121  Q
    |||||||||| ||||| || || ||||| || ||||| || || ||   |||||||||||||||||| |||||||||||||| || ||||| ||||||    
T  53502099 taggaaatgtaagtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaacaattctatctatggtttgaccca 53502196  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 52590785 - 52590852
Alignment:
Q  74 caaggcaaaggaaacagagaacaacaattctacctctggttcgacccaaccaagaacttccacactta 141  Q
    ||||| |||||||| | |||||||||||||||  | ||||||||||| |||||| |||| ||||||||    
T  52590785 caagggaaaggaaataaagaacaacaattctatttgtggttcgaccccaccaaggactttcacactta 52590852  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 423
Target Start/End: Original strand, 52591013 - 52591128
Alignment:
Q  308 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 407  Q
    |||||||  |||||||| || || || | |||| ||||||| || ||||||||||| ||| |||| ||| ||||||| ||||| || ||| | | |||||    
T  52591013 gaatcaaaaggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaa 52591112  T
Q  408 ctgattggtccaaagc 423  Q
    ||||||||||| ||||    
T  52591113 ctgattggtcccaagc 52591128  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 16942656 - 16942747
Alignment:
Q  329 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 420  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942656 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 17013321 - 17013412
Alignment:
Q  329 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 420  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013321 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 47495928 - 47495969
Alignment:
Q  355 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 396  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  47495928 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 47495969  T

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