View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_195 (Length: 236)
Name: NF3772_low_195
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_195 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45568451 - 45568230
Alignment:
| Q |
1 |
ttttaccgttgtagaagtcttttgtacatcatgggcttggagttcattatgttgtcatttgtagcacaa-tacagtttttaacatattgttatcatttgt |
99 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45568451 |
ttttaccgttttagaagtcttttgtacatcatgggctgggagttcattatgttgtcatttgtagcacaaatacagtttttaacatattgttatcatttgt |
45568352 |
T |
|
| Q |
100 |
tttagtatgagcagttaggaattgctaattacactggctacaatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcatt |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45568351 |
tttagtatgagcaggtaggaattgctaattacactggttacaatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcatt |
45568252 |
T |
|
| Q |
200 |
gaataagctactgcaccatatg |
221 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
45568251 |
gaataagctactgcaccatatg |
45568230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 45093769 - 45093569
Alignment:
| Q |
1 |
ttttaccgttgtagaagtcttttgtacatcatgggcttggagttcattatgttgtcatttgtagcacaataca--gtttttaacatattgttatcatttg |
98 |
Q |
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||||| |||| ||||||||||||||| |||||| | | |||||||||||| ||||||||||||||| ||| | ||||||||| |||||||| |||||| |
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| T |
45093769 |
ttttatcgttttagaagtcttttgtaaatcatgtgttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttg |
45093670 |
T |
|
| Q |
99 |
ttttagtatgagcagttaggaattgctaattacactggctacaatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcat |
198 |
Q |
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| T |
45093669 |
ttttagtatgagcaggttggaattgctaattacactggctatcatgtgattcatgatgttcatagcttagtagcatccagaggattgtcatgggattcat |
45093570 |
T |
|
| Q |
199 |
t |
199 |
Q |
| |
|
| |
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|
| T |
45093569 |
t |
45093569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 35816686 - 35816798
Alignment:
| Q |
104 |
gtatgagcagttaggaattgctaattacactggctacaatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcattgaat |
203 |
Q |
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|||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35816686 |
gtatgagcaggttggaattgctaattacactggctatggtgagattcatgatgttcatagcttagtagcatccagaggattgtcgggggattcattgaat |
35816785 |
T |
|
| Q |
204 |
aagctactgcacc |
216 |
Q |
| |
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||||||||||||| |
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|
| T |
35816786 |
aagctactgcacc |
35816798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 45177114 - 45177295
Alignment:
| Q |
40 |
gagttcattatgttgtcatttgtagcacaataca--gtttttaacatattgttatcatttgttttagtatgagcagttaggaattgctaattacactggc |
137 |
Q |
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||||||||||| ||||||| |||| ||||||||| || |||||| |||| | ||| ||||||| | | ||||||| | |||||||||||| ||||| || |
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| T |
45177114 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataacacttgc |
45177212 |
T |
|
| Q |
138 |
tacaatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcattgaataagctactgcaccatat |
220 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||| |
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| T |
45177213 |
tatgatgagattcatgatgttcatagcttagtagcatccagaggattgtcaggggattcgttgaagaagctaccgaaccatat |
45177295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 45102887 - 45102755
Alignment:
| Q |
89 |
ttatcatttgttttagtatgagcagttaggaattgctaattacactggctacaatgagattcatgatgttcatagcttagtagcatccagaggattgtca |
188 |
Q |
| |
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|||| |||||||||||| ||||||| | ||| |||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
45102887 |
ttattatttgttttagtttgagcaggttggagttgctaataacactggctatgatgagtttcatgatgttcatagcttagtatcatccacaggattgtcg |
45102788 |
T |
|
| Q |
189 |
ggggattcattgaataagctactgcaccatatg |
221 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
45102787 |
ggggattcattgaataagctaccgcaccatatg |
45102755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 44666728 - 44666546
Alignment:
| Q |
1 |
ttttaccgttgtagaagtcttttgtacatcatgggcttggagttcattatgttgtcatttgtagcacaataca--gtttttaacatattgttatcatttg |
98 |
Q |
| |
|
|||||||||| |||||||| | || | |||||| | ||||||||||| |||||| |||||||||||| | ||||||||| |||| ||||||| | |
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| T |
44666728 |
ttttaccgttctagaagtcatctgcaaatcatgtgtcgggagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccg |
44666629 |
T |
|
| Q |
99 |
ttttagtatgagcagttaggaattgctaattacactggctacaatgagattcatgatgttcatagcttagtagcatccagagg |
181 |
Q |
| |
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||||||| ||||||| | |||||||||| |||| |||| ||||||||| |||||||||||||||||||||||| ||||| |
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| T |
44666628 |
ttttagtttgagcaggctgcaattgctaataacacctgctatgatgagattcttgatgttcatagcttagtagcatctagagg |
44666546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 44686052 - 44685870
Alignment:
| Q |
1 |
ttttaccgttgtagaagtcttttgtacatcatgggcttggagttcattatgttgtcatttgtagcacaataca--gtttttaacatattgttatcatttg |
98 |
Q |
| |
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|||||||||| |||||||| | || | |||||| | ||||||||||| |||||| |||||||||||| | ||||||||| |||| ||||||| | |
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| T |
44686052 |
ttttaccgttctagaagtcatctgcaaatcatgtgtcgggagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccg |
44685953 |
T |
|
| Q |
99 |
ttttagtatgagcagttaggaattgctaattacactggctacaatgagattcatgatgttcatagcttagtagcatccagagg |
181 |
Q |
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||||||| ||||||| | |||||||||| |||| |||| ||||||||| |||||||||||||||||||||||| ||||| |
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| T |
44685952 |
ttttagtttgagcaggctgcaattgctaataacacctgctatgatgagattcttgatgttcatagcttagtagcatctagagg |
44685870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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