View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_198 (Length: 236)
Name: NF3772_low_198
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_198 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 28172170 - 28172371
Alignment:
| Q |
19 |
tagaaaccaaatactaaaattaagcttcaataagagataccattatattctatagc-ccataattcacacattatttcaagtacattgtctgaccaatca |
117 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
28172170 |
tagaaatcaaatactaaaactatgctttaataagagatgccatcatatgctatagctccataattcacacattatttcaagtacatt--cttaccaatga |
28172267 |
T |
|
| Q |
118 |
cactagtattgtccatatacacatcatagttataataatttggaaaagctaatggagaggagcatgaactgattttagtcaaactttttattgaaaatgg |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28172268 |
cactagtactgtccatatacacatcatagtcataataatttggaaaagctaatggagaggagcatgaactgattttagtcaaactttttattgaaaatgg |
28172367 |
T |
|
| Q |
218 |
tatg |
221 |
Q |
| |
|
|||| |
|
|
| T |
28172368 |
tatg |
28172371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 28153428 - 28153543
Alignment:
| Q |
17 |
agtagaaaccaaatactaaaattaagcttcaataagaga-taccattatattctatagcccataattcacacattatttcaagtacattgtctgaccaat |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28153428 |
agtagaaatcaaatactaaaattaagcttcaataagaaactaccatcatattctatagcccataattcacacattatttctagtacattgtctgaccaat |
28153527 |
T |
|
| Q |
116 |
cacactagtattgtcc |
131 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
28153528 |
cacactagtactgtcc |
28153543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 28179923 - 28180022
Alignment:
| Q |
21 |
gaaaccaaatactaaaattaagcttcaataagagataccattatattctatagcccataattcacacattatttcaagtacattgtctgaccaatcacac |
120 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28179923 |
gaaatcaaatactaaaactaagcttcgataagaattaccatcatatgcaatagcccataattcacacattatttcaagtacattgtatgaccaatcacac |
28180022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 27985996 - 27985905
Alignment:
| Q |
31 |
actaaaattaagcttcaataagagataccattatattctatagcccataattcacacattatttcaagtacattgtctgaccaatcacacta |
122 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||| |||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27985996 |
actaaaactaagctttaataagagatatcatcatatgctttagcccataatttatacattatttcaagtacattgtctgaccaatcacacta |
27985905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 28072527 - 28072436
Alignment:
| Q |
31 |
actaaaattaagcttcaataagagataccattatattctatagcccataattcacacattatttcaagtacattgtctgaccaatcacacta |
122 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||| |||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28072527 |
actaaaactaagctttaataagagatatcatcatatgctttagcccataatttatacattatttcaagtacattgtctgaccaatcacacta |
28072436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 28162551 - 28162592
Alignment:
| Q |
17 |
agtagaaaccaaatactaaaattaagcttcaataagagatac |
58 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28162551 |
agtagaaaccaaatactaaaattaagtttcaataagagatac |
28162592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 28184067 - 28184154
Alignment:
| Q |
17 |
agtagaaaccaaatactaaaattaagcttcaataagagatacca---ttatattctatagcccataattcacacattatttcaagtaca |
102 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| |||||||||||||| | |||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
28184067 |
agtagaaatcaaatgctaaaactaagctt-aataagagataccaccatcatatgatataggtcataattcactcattatttcaagtaca |
28184154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 24747552 - 24747447
Alignment:
| Q |
17 |
agtagaaaccaaatactaaaattaagcttcaataagagataccattatattctatagcccataattcacacattatttcaagtacattgtctgaccaatc |
116 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24747552 |
agtagaaatcaaatactaaaactaagctttgataagagatatcatcatatgctatagcccataattcacacattatttcaagtacattgtcggaccaatc |
24747453 |
T |
|
| Q |
117 |
acacta |
122 |
Q |
| |
|
|||||| |
|
|
| T |
24747452 |
acacta |
24747447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 26414744 - 26414839
Alignment:
| Q |
27 |
aaatactaaaattaagcttcaataagagataccattatattctatagcccataattcacacattatttcaagtacattgtctgaccaatcacacta |
122 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26414744 |
aaatactaaaactaagctttaataagaggtaccataatatgctagagcccataattcacacattatttcaagtacattgtctaaccaatcacacta |
26414839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University