View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_2 (Length: 958)

Name: NF3772_low_2
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_2
NF3772_low_2
[»] chr7 (19 HSPs)
chr7 (92-942)||(22069088-22069936)
chr7 (166-931)||(22062703-22063456)
chr7 (525-931)||(22088002-22088407)
chr7 (429-816)||(22080169-22080556)
chr7 (166-441)||(22087663-22087936)
chr7 (268-449)||(22079984-22080165)
chr7 (10-95)||(22068974-22069059)
chr7 (470-546)||(6865428-6865504)
chr7 (473-538)||(20338293-20338358)
chr7 (737-852)||(661017-661131)
chr7 (500-607)||(20375073-20375180)
chr7 (737-850)||(20133648-20133760)
chr7 (475-546)||(20141449-20141520)
chr7 (475-600)||(20133894-20134018)
chr7 (650-697)||(20338458-20338505)
chr7 (10-45)||(22087005-22087040)
chr7 (882-928)||(22080633-22080679)
chr7 (650-687)||(661187-661224)
chr7 (737-850)||(20351722-20351834)
[»] chr1 (1 HSPs)
chr1 (474-600)||(15960577-15960703)
[»] chr5 (1 HSPs)
chr5 (662-697)||(29641902-29641937)
[»] chr4 (1 HSPs)
chr4 (737-774)||(10460204-10460241)


Alignment Details
Target: chr7 (Bit Score: 667; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 92 - 942
Target Start/End: Original strand, 22069088 - 22069936
Alignment:
Q  92 tccactaatacacatctttatttgttttcgtcaaacaacaaaagtattagggtttgtcnnnnnnnnnnnnncacaagtattagggttcagcgttacagct 191  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||||||||    
T  22069088 tccacaaatacacatctttatttgttttcgtcaaacaacaaaagtactagggtttgtcaaaaataaaaaa-cacaagtattagggttcagcgttacagct 22069186  T
Q  192 ccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctccctccatctcagttgcaggtattcctcccagatgaacttat 291  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  22069187 ccaattctccaaaaacggcaccgccttggtaacaacaaaactccaacatgaatctcctccctccatctcagttgcaggtattcctccccggtgaacttat 22069286  T
Q  292 tgccgaagtgctttccttcctttctatcaaatctctcatgcggctgaagtgtgtgagtaagtcatggaagtacctcatatctgaaacctccttcgccaaa 391  Q
    || ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  22069287 tgtcgaagtgctttccttccttcctgtcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcatatctgaaccctccttcgccaaa 22069386  T
Q  392 ctgcaccttaatagaactacacaagatgcagtccgcacaattgtatcatacaatatgtatatcaggacttgcatggaagtgtccttcacagttttccgtt 491  Q
     |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||  ||||||| ||| |||| |||||||||||||||||||||    
T  22069387 ttgcaccttaatagaactacacaagatgcagtcagcacaattgtatcaaacaatatctattccaggactggcacggaaatgtccttcacagttttccgtt 22069486  T
Q  492 tgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggatt 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||    
T  22069487 tgctcgagaaccctccaatcattatcaatcttccaagagatccttactatccactgaacgacaaggctttccgctacatagttggttcctgcaatggatt 22069586  T
Q  592 gctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaa 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22069587 gctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaa 22069686  T
Q  692 aaattacatggtgatgatggcctaggtttcccttctaattacacctttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaaga 791  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22069687 aaatttcatggtgatgatggcctaggtttcccttgtaattacacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactcgaaaga 22069786  T
Q  792 caacaaatgtaagagtttttagtttgggcgttaatgttttggagaaatatccaagattcccatatgattcatcatcttcgccggatgaaggttgtgcacg 891  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |    
T  22069787 caacaaatgtaagagtttttagtttgggcgttaatg-tttggagaaatatccaagattcccatatgattcatcatcatcgccagatgaaggttatgcatg 22069885  T
Q  892 tgagaggtagtgttaattggttggcaattcacaattacatcggttactatt 942  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22069886 tgagaggtagtgttaattggttggcaattcacaattacatcagttactatt 22069936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 166 - 931
Target Start/End: Original strand, 22062703 - 22063456
Alignment:
Q  166 aagtattagggttcagcgttacagctccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctccctccatctcagttg 265  Q
    |||||||||||||||||||| |||||||||||| |||||   ||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  22062703 aagtattagggttcagcgtttcagctccaattcaccaaac--ggcacagcctttgtaacaacaaaactccatcatgaatctcctccctccatctcagttg 22062800  T
Q  266 caggtattcctcccagatgaacttattgccgaagtgctttccttcctttctatcaaatctctcatgcggctgaagtgtgtgagtaagtcatggaagtacc 365  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22062801 caggtattcctccccggtgaacttattgtcgaagtgctttccttccttcctgtcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacc 22062900  T
Q  366 tcatatctgaaacctccttcgccaaactgcaccttaatagaactacacaagatgcagtccgcacaattgtatcatacaatatgtatatcaggacttgcat 465  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||            
T  22062901 tcatatctgaaccctccttcgccaaactgcaccttaacagaactacacaagatgcagtccgcacaattgtatcataccatatgcattccagg-------- 22062992  T
Q  466 ggaagtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgc 565  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||| |    
T  22062993 -gacgtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaactgaatgacaaggattgccac 22063091  T
Q  566 tacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttgga 665  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063092 tacatcgttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttgga 22063191  T
Q  666 acccagccacaaggataatatcagaaaaattacatggtgatgatggcctaggtttcccttctaattacacctttggttatgataattcaacagaaactta 765  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  22063192 acccagccacaaggataatatcagaaaaatttcatggtgatgatggcctaggtttcccttgtaattacacgtttggttatgataattcaacagaaactta 22063291  T
Q  766 taaggtggtgtatttcactccaaagacaacaaatgtaagagtttttagtttgggcgttaatgttttggagaaatatccaagattcccatatgattcatca 865  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  22063292 taaggtggtgtatttcactcgaaagacaacaaatgtaagagtttttagtttgggcgttaatg-tttggagaaatatccaagattcccctatgattcatca 22063390  T
Q  866 tcttcgccggatgaaggttgtgcacgtgagaggtagtgttaattggttggcaattcacaattacat 931  Q
    || | | | ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||    
T  22063391 tcattggcagatgaaggttgtgcatgtgaaagatagtgttaattggttggcaattcacaattacat 22063456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 525 - 931
Target Start/End: Original strand, 22088002 - 22088407
Alignment:
Q  525 caagagatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagaga 624  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||  |||||||     
T  22088002 caagagatccttactatcaactgacggacaaggattgccgctacatcattggttcctgcaatggattgctttgcttattcggcggaagtgagtatagagc 22088101  T
Q  625 ggacaatggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaattacatggtgatgatggcctaggtttccct 724  Q
    |||| | || |||||||||||||| ||  ||||| |||||||||| |||||||||| |||||||||||||||| ||   ||||||||||||| |||||||    
T  22088102 ggacgaaggagggtatagagagaaatgaattcgtgtttggaacccggccacaaggacaatatcagaaaaattagatttggatgatggcctagatttccct 22088201  T
Q  725 tctaattacacctttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaagacaacaaatgtaagagtttttagtttgggcgtta 824  Q
    ||  ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22088202 tcgcatttcaagtttggttatgataattcaacagaaacttataaggtggtgtatttcactccagagacaacaaatgtaagagtttttagtttgggcgtta 22088301  T
Q  825 atgttttggagaaatatccaagattcccatatgattcatcatcttcgccggatgaaggttgtgcacgtgagaggtagtgttaattggttggcaattcaca 924  Q
    ||| |||||||||||||||||||||||| ||||| ||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||||||||||    
T  22088302 atg-tttggagaaatatccaagattcccctatgactcatcatcttcgccggtggaaggttgtgtatgtgagaggtagtgttaattggttggcaattcaca 22088400  T
Q  925 attacat 931  Q
    |||||||    
T  22088401 attacat 22088407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 429 - 816
Target Start/End: Original strand, 22080169 - 22080556
Alignment:
Q  429 caattgtatcatacaatatgtatatcaggacttgcatggaagtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaag 528  Q
    |||||||||||  |||||||| |  || || ||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||     
T  22080169 caattgtatcacgcaatatgtcttccacgaattgcatggtcgtgaccttcacagttttccgtttgctcgagaaccctcccatcattatcaatctttcaaa 22080268  T
Q  529 agatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggac 628  Q
    | |||||||||||| ||| ||||| ||||| |||  | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22080269 atatccttactatcgactcaaggaaaaggactgcttccacattgttggttcctgcaatggattgctttgcttatttggcggaactggcaatagagaggac 22080368  T
Q  629 aatggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaattacatggtgatgatggcctaggtttcccttcta 728  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  22080369 actggggggtatagagagaattggcttcgtttttggaacccagccacaaggacaatatcagaaaaattagatggtgatgatggcctaggtttccctttta 22080468  T
Q  729 attacacctttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaagacaacaaatgtaagagtttttagttt 816  Q
    | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  22080469 acttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaaaacaacaaacgtaagagttttcagttt 22080556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 166 - 441
Target Start/End: Original strand, 22087663 - 22087936
Alignment:
Q  166 aagtattagggttcagcgttacagctccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctccctccatctcagttg 265  Q
    |||||||||||||||||||| ||||||||||||||||||   ||| | |  ||||||| || |||||||||| |||||||||||||||||||||||||||    
T  22087663 aagtattagggttcagcgtttcagctccaattctccaaac--ggcgctgtattggtaataagaaaactccaatatgaatctcctccctccatctcagttg 22087760  T
Q  266 caggtattcctcccagatgaacttattgccgaagtgctttccttcctttctatcaaatctctcatgcggctgaagtgtgtgagtaagtcatggaagtacc 365  Q
    |||| ||||||||| || ||||||||  | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  22087761 caggcattcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaagtacc 22087860  T
Q  366 tcatatctgaaacctccttcgccaaactgcaccttaatagaactacacaagatgcagtccgcacaattgtatcata 441  Q
    |||| || ||| ||| |||||||||| |||||||||| |||||||||||| |||||||||||| | ||||||||||    
T  22087861 tcatgtccgaaccctacttcgccaaattgcaccttaacagaactacacaaaatgcagtccgcagatttgtatcata 22087936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 268 - 449
Target Start/End: Original strand, 22079984 - 22080165
Alignment:
Q  268 ggtattcctcccagatgaacttattgccgaagtgctttccttcctttctatcaaatctctcatgcggctgaagtgtgtgagtaagtcatggaagtacctc 367  Q
    |||||||||||| || |||||||||| ||||||||||||||||||| || || |||||||||| |||||||||||||||||||| |||||||||||||||    
T  22079984 ggtattcctccctgacgaacttattgtcgaagtgctttccttccttcctgtccaatctctcatacggctgaagtgtgtgagtaaatcatggaagtacctc 22080083  T
Q  368 atatctgaaacctccttcgccaaactgcaccttaatagaactacacaagatgcagtccgcacaattgtatcatacaatatgt 449  Q
    ||||| ||| ||||||||| |||| |||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||    
T  22080084 atatccgaaccctccttcgtcaaattgcaccttaagagaactaaacaagatgcagtccgcaaatttgtatcatacaatatgt 22080165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 22068974 - 22069059
Alignment:
Q  10 tgtttgttggagagaaagtatatcatttgtttgttatagnnnnnnnntatggaatcaaacttatccaaaagagaaaatgtcttcca 95  Q
    ||||||||||||||||||||||||| |||||||||||||        |||||||| ||||||||||||||||||||||||||||||    
T  22068974 tgtttgttggagagaaagtatatcaattgtttgttatagaaaaaaaatatggaatgaaacttatccaaaagagaaaatgtcttcca 22069059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 470 - 546
Target Start/End: Complemental strand, 6865504 - 6865428
Alignment:
Q  470 gtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 546  Q
    ||||||||||| ||| | |||||||| ||| |||||||||||||||||||||||||  |||||||||| ||||||||    
T  6865504 gtgtccttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatccttattatcaact 6865428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 473 - 538
Target Start/End: Original strand, 20338293 - 20338358
Alignment:
Q  473 tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttac 538  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||  ||||||||||    
T  20338293 tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac 20338358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 852
Target Start/End: Complemental strand, 661131 - 661017
Alignment:
Q  737 tttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaagacaacaaatgtaagagtttttagtttgggcgttaatgttttggaga 836  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  |||  |||||||||| |||||| |||| | ||| |||| ||||| ||||||||    
T  661131 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcaatttaggcgataatg-tttggaga 661033  T
Q  837 aatatccaagattccc 852  Q
    ||||| ||| ||||||    
T  661032 aatattcaaaattccc 661017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 500 - 607
Target Start/End: Complemental strand, 20375180 - 20375073
Alignment:
Q  500 aaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgct 599  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||  | |||||  |  ||| | |||||||||| || ||||||||||| || ||||    
T  20375180 aaccctccaatcattttcaatcttccagaagatccttactatcaacttgatgacaaacacggcctcgacatagttggctcttgcaatggattactctgct 20375081  T
Q  600 tatttggc 607  Q
    | ||||||    
T  20375080 tgtttggc 20375073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 737 - 850
Target Start/End: Complemental strand, 20133760 - 20133648
Alignment:
Q  737 tttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaagacaacaaatgtaagagtttttagtttgggcgttaatgttttggaga 836  Q
    ||||| |||| ||||||||| || ||||| ||||| ||||||||   |||||| |||||||||||||| ||||| ||||| |||| ||||  ||||||||    
T  20133760 tttggctatgttaattcaaccgacacttacaaggtcgtgtatttagttccaaatacaacaaatgtaagtgttttcagttttggcgataat-atttggaga 20133662  T
Q  837 aatatccaagattc 850  Q
    | ||| ||||||||    
T  20133661 actattcaagattc 20133648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 475 - 546
Target Start/End: Complemental strand, 20141520 - 20141449
Alignment:
Q  475 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 546  Q
    |||||| ||||| ||||||||| | ||||||||||||||||||||||| |||  ||||||| || |||||||    
T  20141520 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaact 20141449  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 475 - 600
Target Start/End: Complemental strand, 20134018 - 20133894
Alignment:
Q  475 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagtt 574  Q
    |||||| ||||| ||||||||| ||||||||||||||| || ||||||||||  ||||||| || ||||||| | | ||||||| || |  ||  | |||    
T  20134018 cttcactgtttttcgtttgctccagaaccctccaatca-taccaatcttccagaagatcctaaccatcaacttacgaacaaggactgtcattatgttgtt 20133920  T
Q  575 ggttcctgcaatggattgctttgctt 600  Q
    ||||| ||||||||||| || |||||    
T  20133919 ggttcatgcaatggattactctgctt 20133894  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 697
Target Start/End: Original strand, 20338458 - 20338505
Alignment:
Q  650 tggcttcgtttttggaacccagccacaaggataatatcagaaaaatta 697  Q
    |||||||||||||||||||| |||||||||| |||||| | |||||||    
T  20338458 tggcttcgtttttggaaccctgccacaaggaaaatatctgcaaaatta 20338505  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 22087005 - 22087040
Alignment:
Q  10 tgtttgttggagagaaagtatatcatttgtttgtta 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22087005 tgtttgttggagagaaagtatatcaattgtttgtta 22087040  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 882 - 928
Target Start/End: Original strand, 22080633 - 22080679
Alignment:
Q  882 gttgtgcacgtgagaggtagtgttaattggttggcaattcacaatta 928  Q
    ||||||||  ||||  |||||||||||||||||||||||||||||||    
T  22080633 gttgtgcatttgagtagtagtgttaattggttggcaattcacaatta 22080679  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 687
Target Start/End: Complemental strand, 661224 - 661187
Alignment:
Q  650 tggcttcgtttttggaacccagccacaaggataatatc 687  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  661224 tggcttcgtttttggaacccggccacaaggacaatatc 661187  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 850
Target Start/End: Original strand, 20351722 - 20351834
Alignment:
Q  737 tttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaagacaacaaatgtaagagtttttagtttgggcgttaatgttttggaga 836  Q
    |||||||| | ||||||||| || ||||||||||||| ||||||   |||||| ||||  |||||    ||||| |||||||||| ||||| ||||||||    
T  20351722 tttggttacgttaattcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataatg-tttggaga 20351820  T
Q  837 aatatccaagattc 850  Q
    ||||| ||| ||||    
T  20351821 aatattcaaaattc 20351834  T

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Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 474 - 600
Target Start/End: Original strand, 15960577 - 15960703
Alignment:
Q  474 ccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagt 573  Q
    ||||||||||||| ||||||||||| ||||||||||||||| | |||||||| | ||||||||| |||||| | || |||||||||||   ||| || ||    
T  15960577 ccttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatccttattatcaatttaaagacaaggattgtgtctatattgt 15960676  T
Q  574 tggttcctgcaatggattgctttgctt 600  Q
    |||||| ||||||||||||||||||||    
T  15960677 tggttcttgcaatggattgctttgctt 15960703  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 697
Target Start/End: Original strand, 29641902 - 29641937
Alignment:
Q  662 tggaacccagccacaaggataatatcagaaaaatta 697  Q
    |||||||||||||||||||||||||| |||||||||    
T  29641902 tggaacccagccacaaggataatatcggaaaaatta 29641937  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 774
Target Start/End: Original strand, 10460204 - 10460241
Alignment:
Q  737 tttggttatgataattcaacagaaacttataaggtggt 774  Q
    ||||||||||||||||| || |||||||||||||||||    
T  10460204 tttggttatgataattcgactgaaacttataaggtggt 10460241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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