View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_20 (Length: 502)
Name: NF3772_low_20
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 20909694 - 20910161
Alignment:
| Q |
18 |
caaaagagcactctaagcaacgtgaatattctttttctgacaatggaaagataagtaaagggtgg-accttataacacattaacaattgggaactatatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
20909694 |
caaaagagcactctaagcaacgtgaatattctttttctgacaatggaaagataagtaaagggtgggaccttataacacattaacagttgggaactatatt |
20909793 |
T |
|
| Q |
117 |
ctctctttatcaaacggaaccagttgaaagcatttatgtatatccaacgcgttcttgcatggttaagaagttgccctaaaattaaagcgttctcatagta |
216 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20909794 |
ctctctttttcaaacggaaacagttgaaagcatttatgtatatccaacgcgttcttgcatggttaagaagttgccctaaaattaaagcgttctcatagta |
20909893 |
T |
|
| Q |
217 |
atttcaaagttcttaattaatgttttggttaaaccttggcctttggcatttgctatataaaccctagcatcacttcnnnnnnnccacaccaaatattttc |
316 |
Q |
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| T |
20909894 |
atttcaaagttcttaattaatgttttggttaaaccttggcctttggcatttgctatataaaccctagcatcacttctttttttccacaccaaatattttc |
20909993 |
T |
|
| Q |
317 |
gagttcttttactttctagttatagcaaaagatggcttcaagttcaagcgttctgctttttgtgcttcttggtgctcttgtttgtagtagcattgatgca |
416 |
Q |
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| T |
20909994 |
gagttcttttactttctagttatagcaaaagatggcttcaagttcaagcattctgctttttgtgcttcttggtgctcttgtttgtagtagcattgatgca |
20910093 |
T |
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| Q |
417 |
aggaagcttggggttagtgatgataaggggttaagagatgagaaaactttctttcgtcgtccagggtt |
484 |
Q |
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| T |
20910094 |
aggaagcttggggttagtgatgataaggggttaagagatgagaaaactttctatcggcgtccagggtt |
20910161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 36 - 484
Target Start/End: Original strand, 20912457 - 20912904
Alignment:
| Q |
36 |
aacgtgaatattctttttctgacaatggaaagataagtaaagggt-ggaccttataacacattaacaattgggaactatattctctctttatcaaacgga |
134 |
Q |
| |
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||||| ||||| |||||||||||||| | || |||||| |||||| ||||||||||| ||||||||| |||| ||| ||| |||||||| |||||| || |
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| T |
20912457 |
aacgttaatatcctttttctgacaattgcaaaataagtgaagggtaggaccttataagacattaacagttggaaacaata--ctctctttttcaaactga |
20912554 |
T |
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| Q |
135 |
accagttgaaagcatttatgtatatccaacgcgttcttgcatggttaagaagttg-ccctaaaattaaagcgttctcatagtaatttcaaagttcttaat |
233 |
Q |
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| T |
20912555 |
aacagttgaaagcatttatgtat--ccaacgcgttcttgcatggttaagaagttgtccctaaaattaaagcattctcatagtaatttcaaagttcctaat |
20912652 |
T |
|
| Q |
234 |
taatgttttggttaaaccttggcctttggcatttgctatataaaccctagcatcacttcnnnnnnnccacaccaaatattttcgagttc-ttttactttc |
332 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||||| |
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| T |
20912653 |
taatgttttggttaaacctt-gcccttggcatttgctatataaaccctagcatcacttcattttttccacaccaaatattttaaacttctttttactttc |
20912751 |
T |
|
| Q |
333 |
tag----ttatagcaaaagatggcttcaagttcaagcgttctgctttttgtgcttcttggtgctcttgtttgtagtagcattgatgcaaggaagcttggg |
428 |
Q |
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||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20912752 |
tagacatatatagcacaagatggcttcaagttcaagtgttctgctttttgtgcttcttggtgctcttgtttgcagtagcattgatgcaaggaagcttggg |
20912851 |
T |
|
| Q |
429 |
gttagtgatgataaggggttaagagatgagaaaactttctttcgtcgtccagggtt |
484 |
Q |
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||||| |||||||||||||| ||||||||||||||||||| |||||| ||||| |
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| T |
20912852 |
gttag---tgataaggggttaaatgatgagaaaactttctttcatcgtcctgggtt |
20912904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 36 - 484
Target Start/End: Original strand, 20920575 - 20921022
Alignment:
| Q |
36 |
aacgtgaatattctttttctgacaatggaaagataagtaaagggt-ggaccttataacacattaacaattgggaactatattctctctttatcaaacgga |
134 |
Q |
| |
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||||| ||||| |||||||||||||| | || |||||| |||||| ||||||||||| ||||||||| |||| ||| ||| |||||||| |||||| || |
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| T |
20920575 |
aacgttaatatcctttttctgacaattgcaaaataagtgaagggtaggaccttataagacattaacagttggaaacaata--ctctctttttcaaactga |
20920672 |
T |
|
| Q |
135 |
accagttgaaagcatttatgtatatccaacgcgttcttgcatggttaagaagttg-ccctaaaattaaagcgttctcatagtaatttcaaagttcttaat |
233 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
20920673 |
aacagttgaaagcatttatgtat--ccaacgcgttcttgcatggttaagaagttgtccctaaaattaaagcattctcatagtaatttcaaagttcctaat |
20920770 |
T |
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| Q |
234 |
taatgttttggttaaaccttggcctttggcatttgctatataaaccctagcatcacttcnnnnnnnccacaccaaatattttcgagttc-ttttactttc |
332 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||||| |
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| T |
20920771 |
taatgttttggttaaacctt-gcccttggcatttgctatataaaccctagcatcacttcattttttccacaccaaatattttaaacttctttttactttc |
20920869 |
T |
|
| Q |
333 |
tag----ttatagcaaaagatggcttcaagttcaagcgttctgctttttgtgcttcttggtgctcttgtttgtagtagcattgatgcaaggaagcttggg |
428 |
Q |
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||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20920870 |
tagacatatatagcacaagatggcttcaagttcaagtgttctgctttttgtgcttcttggtgctcttgtttgcagtagcattgatgcaaggaagcttggg |
20920969 |
T |
|
| Q |
429 |
gttagtgatgataaggggttaagagatgagaaaactttctttcgtcgtccagggtt |
484 |
Q |
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||||| |||||||||||||| ||||||||||||||||||| |||||| ||||| |
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| T |
20920970 |
gttag---tgataaggggttaaatgatgagaaaactttctttcatcgtcctgggtt |
20921022 |
T |
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