View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_201 (Length: 235)
Name: NF3772_low_201
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_201 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 17493956 - 17494170
Alignment:
| Q |
4 |
tatataattttgcataagcaattttgcttacaaatagtgtttattgtataaactttgcaggctatttggccttatagtggtcattatcacccaactgaag |
103 |
Q |
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| T |
17493956 |
tatataattttgcataagcaattttgcttacaaatagtgtttattgtataaactttgcaggctatttggccttatagtggtcattatcacccaactgaag |
17494055 |
T |
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| Q |
104 |
agaacttcagagaatttgttagctttcttgaggagcacaaagtagacctctctaatgtcaaggtgaatttttatctaactaatactagtgaacaaaaaag |
203 |
Q |
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| T |
17494056 |
agaacttcagagaatttgttagttttcttgaggagcacaaagtagacctctctaatgtcaaggtgaattttcatctaactaatactagt---aaaaaaag |
17494152 |
T |
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| Q |
204 |
taaattggatgttgaata |
221 |
Q |
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|||||||||||| ||||| |
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| T |
17494153 |
taaattggatgtggaata |
17494170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 52367781 - 52367673
Alignment:
| Q |
59 |
tgcaggctatttggccttatagtggtcattatcacccaactgaagagaacttcagagaatttgttagctttcttgaggagcacaaagtagacctctctaa |
158 |
Q |
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| T |
52367781 |
tgcaggctatttggccatacagtggacactaccatccaacagaagagaacttcaaagaatttataagctttcttggagagcacaatgtagacctcacaaa |
52367682 |
T |
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| Q |
159 |
tgtcaaggt |
167 |
Q |
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| T |
52367681 |
tgtaaaggt |
52367673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 23247994 - 23247889
Alignment:
| Q |
62 |
aggctatttggccttatagtggtcattatcacccaactgaagagaacttcagagaatttgttagctttcttgaggagcacaaagtagacctctctaatgt |
161 |
Q |
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| T |
23247994 |
aggctatttggccataaagtggatactatcatccaacttaagagaacttcaaagagtttttaagctttcttggagagcataatgtagacctcacaaatgt |
23247895 |
T |
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| Q |
162 |
caaggt |
167 |
Q |
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||||| |
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| T |
23247894 |
aaaggt |
23247889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 24252830 - 24252725
Alignment:
| Q |
62 |
aggctatttggccttatagtggtcattatcacccaactgaagagaacttcagagaatttgttagctttcttgaggagcacaaagtagacctctctaatgt |
161 |
Q |
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| T |
24252830 |
aggctatttggccataaagtggatactatcatccaattgaagagaacttcaaagagtttttaagctttcttggagagcataatgtagacatcacaaatgt |
24252731 |
T |
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| Q |
162 |
caaggt |
167 |
Q |
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||||| |
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| T |
24252730 |
aaaggt |
24252725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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