View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_204 (Length: 234)
Name: NF3772_low_204
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_204 |
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| [»] scaffold0740 (1 HSPs) |
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Alignment Details
Target: scaffold0740 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0740
Description:
Target: scaffold0740; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 1970 - 2161
Alignment:
| Q |
1 |
catggggcaatttaacatacactagataaaattacttagtagttttctcacaaaatcatagcatacattctacccaaggagggttctaaactaataggaa |
100 |
Q |
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| T |
1970 |
catggggcaatttaacatacactagataaaattacttagtagttttctcacacaatcatagcatacattctacccaaggagggttctaaactaataggaa |
2069 |
T |
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| Q |
101 |
ctcaccataagaattctggattctctcaatagcttttgccacaattcaaaactcctaccattgctttcccttcagccttcttctcttgctct |
192 |
Q |
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| T |
2070 |
ctcgccataagaattctggattctctcaatagcttttgccacaattcaaagctcctaccattgctttccctgcagccttcttctcttgctct |
2161 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 20926487 - 20926447
Alignment:
| Q |
67 |
attctacccaaggagggttctaaactaataggaactcacca |
107 |
Q |
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| T |
20926487 |
attctacccaaggagggttctaagctaataggaactgacca |
20926447 |
T |
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