View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_206 (Length: 232)
Name: NF3772_low_206
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_206 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 887291 - 887505
Alignment:
| Q |
18 |
gaatacgcagtggcattttattgttcatatatcttgtaaaatcacccttgcatttgctttcgatgattatgcaattttatttaagatactaacccagcaa |
117 |
Q |
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| T |
887291 |
gaatacgcagtggcattttattgttcatatatcttgtaaaatcacccttgcatttgctttcgatgattatgcaattttatttaagatactaacccagcaa |
887390 |
T |
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| Q |
118 |
atgcttgaactagaagaagggtacatagaaatacatcagtaagaacaagcttaacaaagctgcccaaataaaaaacaccaagaaatacaacaagactaaa |
217 |
Q |
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| T |
887391 |
atgcttgaactagaagaagggtacatagaaatacatcagtaagaacaagcttaacaaagctgcccaaataaaaaacaccaagaaatacaacaagactaaa |
887490 |
T |
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| Q |
218 |
atacaccaacagagc |
232 |
Q |
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| T |
887491 |
atacaccaacagagc |
887505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 7420691 - 7420814
Alignment:
| Q |
103 |
atactaacccagcaaatgcttgaactagaagaagggtacatagaaatacatcagtaagaacaagcttaacaaagctgcccaaataaaaaacaccaagaaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7420691 |
atactaacccagcaaatgcttgaactagaagaaggatacatagataaatatcagtaagaacaagcttaacaaagctgcccaaat--aaaacaccaagaaa |
7420788 |
T |
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| Q |
203 |
tacaacaagactaaaatacaccaaca |
228 |
Q |
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| T |
7420789 |
tacaacaagactaaaatacaccaaca |
7420814 |
T |
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