View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_21 (Length: 496)
Name: NF3772_low_21
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 26374607 - 26375064
Alignment:
| Q |
19 |
gtgggagatgcaacattagtttgaataaattgattttcatttcaatagtctcctttgttttttacttttgaataataagctacaaagaacattttatgtt |
118 |
Q |
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| T |
26374607 |
gtgggagatgcaacattagtttgaataaattgattttcatttcaataatctcctttgttttttacttttgaataataagctacaaagaacattttatgtt |
26374706 |
T |
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| Q |
119 |
gtattatggctttggattccgtggattttatgtatgtcaagnnnnnnnnnnnntttgctttaacgtagataaatatctttcagtttcaatgcaaatttca |
218 |
Q |
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| T |
26374707 |
gtattatggctttggattccgtggattttatgtatgtcaagaataaaaataa-tttgctttaacgtagataaatatctttcagtttcaatgcaaatttca |
26374805 |
T |
|
| Q |
219 |
agtatttaaccatcaaatgtgtgttattgggaattctcatctgatctgataatacttaattcaaaatctatcaacnnnnnnnnnnnnnnnnnnnn-tcaa |
317 |
Q |
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| T |
26374806 |
agtatttaactatcaaatgtgtgttattgggaattctcatctgatatgataatacttaattcaaaatctatcaacaaaaaaactcttcaaaaaaaatcaa |
26374905 |
T |
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| Q |
318 |
gggttaatccctattttagtctttgtaatatccgtctattgtttgtctccaagagactaaattacaagttattgatgataatgtttgtacggcttttatg |
417 |
Q |
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| T |
26374906 |
gggttaatccctattttagtctttgtaatatctgtctattgtttgtctccaagagactaaattacaagttattgatgataatgtttgtacggcttttatg |
26375005 |
T |
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| Q |
418 |
gggatctcctttacactcttactcttttcggctggcagtgggtgcatcaggtggtttgt |
476 |
Q |
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| T |
26375006 |
gggatctcctttacactcttactcttttcggccggcagtggatgcgtcaggtggtttgt |
26375064 |
T |
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Back To:
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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 477
Target Start/End: Original strand, 19611352 - 19611473
Alignment:
| Q |
355 |
attgtttgtctccaagagactaaattacaagttattgatgataatgtttgtacggcttttatggggatctcctttacactcttactcttttcggctggca |
454 |
Q |
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||||| ||||| ||||| ||||||||||||||||| ||||||| | ||||| ||||||| |||||| || || ||||| |||||||||||||| | | || |
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| T |
19611352 |
attgtctgtctgcaagaaactaaattacaagttatagatgatagtatttgtgcggcttt-atggggttcaccattacaatcttactcttttcgtcggaca |
19611450 |
T |
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| Q |
455 |
gtgggtgcatcaggtggtttgtt |
477 |
Q |
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| T |
19611451 |
gtgggtgcgtcaggtggtttgtt |
19611473 |
T |
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