View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_210 (Length: 228)
Name: NF3772_low_210
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_210 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1154610 - 1154833
Alignment:
| Q |
1 |
ccatgctaggaaccattgctattgtgataagaaaagatgtttagtaagtactatcaatcttcatgccatcatgatcctttcgaagcttctgtccaagagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1154610 |
ccatgctaggaaccattgctattgtgataagaaaagatgtttagtaagtactatcaatcttcatgccatcatgatcctttcgaagcttctgtccaagagc |
1154709 |
T |
|
| Q |
101 |
agttggatagtggacagaattgcttttgtccattccaaatctttccaatacttccatcacatatcttttttgactaatggaaaatgccatcagtattttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
1154710 |
agttggatagtggacagaattgcttttgtccattccaaatctctccaatacttccatcacatatcttttttgactaatgaaaaatgccatcagtcttttg |
1154809 |
T |
|
| Q |
201 |
aattactt-caacgccaagaaagt |
223 |
Q |
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|||||||| ||||||||||||||| |
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| T |
1154810 |
aattacttccaacgccaagaaagt |
1154833 |
T |
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