View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_213 (Length: 227)
Name: NF3772_low_213
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_213 |
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Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25989435 - 25989503
Alignment:
| Q |
1 |
agtgcagtttcataaagttagatagatatgttcattttggacactgcatacacaaatggtcaatcatac |
69 |
Q |
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| T |
25989435 |
agtgcagttgcataaagttagatagatatgttcattttggacactgcatacacaaatggtcaatcatac |
25989503 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 25993540 - 25993595
Alignment:
| Q |
14 |
aaagttagatagatatgttcattttggacactgcatacacaaatggtcaatcatac |
69 |
Q |
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| T |
25993540 |
aaagttagatagttatgttcattttggacactacatacacaaacggtcaatcatac |
25993595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 4571043 - 4571083
Alignment:
| Q |
29 |
tgttcattttggacactgcatacacaaatggtcaatcatac |
69 |
Q |
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| T |
4571043 |
tgttcattttggacactgcatacacaaatagtcaaccatac |
4571083 |
T |
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