View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_216 (Length: 225)

Name: NF3772_low_216
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_216
NF3772_low_216
[»] chr7 (4 HSPs)
chr7 (1-210)||(45284597-45284808)
chr7 (3-38)||(7836888-7836923)
chr7 (3-42)||(12935823-12935862)
chr7 (3-36)||(27424922-27424955)
[»] chr4 (7 HSPs)
chr4 (3-43)||(51890880-51890920)
chr4 (3-42)||(12625912-12625951)
chr4 (3-42)||(23924820-23924859)
chr4 (3-42)||(49264609-49264648)
chr4 (5-43)||(31852434-31852472)
chr4 (3-43)||(16294280-16294320)
chr4 (3-43)||(40486524-40486564)
[»] chr1 (8 HSPs)
chr1 (3-43)||(26824274-26824314)
chr1 (3-43)||(31124585-31124625)
chr1 (3-41)||(7491844-7491882)
chr1 (3-41)||(37280784-37280822)
chr1 (3-36)||(41620462-41620495)
chr1 (3-43)||(2514556-2514596)
chr1 (3-35)||(23991219-23991251)
chr1 (3-43)||(29441456-29441496)
[»] chr3 (7 HSPs)
chr3 (3-42)||(44764803-44764842)
chr3 (3-41)||(24303473-24303511)
chr3 (3-43)||(5173957-5173997)
chr3 (3-43)||(18764815-18764855)
chr3 (3-43)||(21767638-21767678)
chr3 (3-43)||(28951799-28951839)
chr3 (3-39)||(32401573-32401609)
[»] chr8 (4 HSPs)
chr8 (3-42)||(43847018-43847057)
chr8 (5-43)||(12927644-12927682)
chr8 (1-43)||(25812156-25812198)
chr8 (3-43)||(38283207-38283247)
[»] chr2 (1 HSPs)
chr2 (9-43)||(34614069-34614103)
[»] chr5 (1 HSPs)
chr5 (5-42)||(5908266-5908303)
[»] scaffold0246 (1 HSPs)
scaffold0246 (3-43)||(24463-24503)
[»] chr6 (2 HSPs)
chr6 (3-43)||(29646495-29646535)
chr6 (3-43)||(32788801-32788841)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 45284808 - 45284597
Alignment:
Q  1 caacatttaattgtgtgagctctagcccctaggctattagaccnnnnnnnnntataacacccgacaaaacgtaatatattaaagagtcatcctctatttt 100  Q
    |||||||||||||||||||||||| || |||| ||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284808 caacatttaattgtgtgagctctaaccactagactattagaccaaaaaaaaatataacacccgacaaaacgtaatatattaaagagtcatcctctatttt 45284709  T
Q  101 nnnnnnntcatcannnnnnnnngtt--gcttttacctacaaacaagacggtagatatatttaaaacaaaacatatagcctgaatatcaatgaacctttgt 198  Q
           ||||||          ||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  45284708 aaaaaaatcatcaattttttgttttttgcttttacctacaaacaagacggtagatagatttaaaacaaaacatatagcctgaatatcaatgaacctttat 45284609  T
Q  199 ctatgaacaatt 210  Q
    ||||||||||||    
T  45284608 ctatgaacaatt 45284597  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 7836923 - 7836888
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctatt 38  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7836923 acatttaattgtgtgagctctagccactaggctatt 7836888  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 12935823 - 12935862
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagac 42  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  12935823 acatttaattgtgtgagctctagccactaggctactagac 12935862  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 27424922 - 27424955
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggcta 36  Q
    ||||||||||||||||||||||||| ||||||||    
T  27424922 acatttaattgtgtgagctctagccactaggcta 27424955  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 51890880 - 51890920
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  51890880 acatttaattgtgtgagctctagccactaggctattagacc 51890920  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 12625912 - 12625951
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagac 42  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  12625912 acatttaattgtgtgaactctagccactaggctattagac 12625951  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 23924859 - 23924820
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagac 42  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  23924859 acatttatttgtgtgagctctagccactaggctattagac 23924820  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 49264609 - 49264648
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagac 42  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  49264609 acatttaattgtgtgagctctagccactaggctaatagac 49264648  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 31852434 - 31852472
Alignment:
Q  5 atttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  31852434 atttaattgtgtgagctctagccactaggctactagacc 31852472  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 16294280 - 16294320
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||||| |||||||||||||| |||||||| ||||||    
T  16294280 acatttaattatgtgagctctagccactaggctactagacc 16294320  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 40486524 - 40486564
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  40486524 acatttaaatgtgtgagctctagccactaggctactagacc 40486564  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 26824274 - 26824314
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  26824274 acatttaattgtgtgagctctagccactaggctattagacc 26824314  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 31124625 - 31124585
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  31124625 acatttaattgtgtgagctctagccactaggctattagacc 31124585  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 7491844 - 7491882
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattaga 41  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  7491844 acatttaattgtgtgagctctagccactaggctactaga 7491882  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 37280784 - 37280822
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattaga 41  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  37280784 acatttaattgtgtgagctccagccactaggctattaga 37280822  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 41620462 - 41620495
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggcta 36  Q
    ||||||||||||||||||||||||| ||||||||    
T  41620462 acatttaattgtgtgagctctagccactaggcta 41620495  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 2514596 - 2514556
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||||||||||||||| |||| ||| |||||||||||    
T  2514596 acatttaattgtgtgagctccagccactatgctattagacc 2514556  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 23991251 - 23991219
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggct 35  Q
    ||||||||||||||||||||||||| |||||||    
T  23991251 acatttaattgtgtgagctctagccactaggct 23991219  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 29441456 - 29441496
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||||||||| | |||||| ||||||    
T  29441456 acatttaattgtgtgagctctagccaccaggctactagacc 29441496  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 44764803 - 44764842
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagac 42  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  44764803 acatttaattgtgtgagctctagccactaggctattagac 44764842  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 24303473 - 24303511
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattaga 41  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  24303473 acatttaattgtgtgagctctagccactaggctattaga 24303511  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 5173997 - 5173957
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  5173997 acatttaattgtgtgagctctagccactaggctactagacc 5173957  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 18764855 - 18764815
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  18764855 acatttaaatgtgtgagctctagccactaggctattagacc 18764815  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 21767678 - 21767638
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||||||||  |||||||||| ||||    
T  21767678 acatttaattgtgtgagctctagctactaggctatttgacc 21767638  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 28951799 - 28951839
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||| |||||||||||||||| ||||||||| |||||    
T  28951799 acatttaaatgtgtgagctctagccactaggctatcagacc 28951839  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 32401573 - 32401609
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctatta 39  Q
    |||||||||||||||||||| |||| |||||||||||    
T  32401573 acatttaattgtgtgagctccagccactaggctatta 32401609  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 43847018 - 43847057
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagac 42  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  43847018 acatttaattgtgtgagctctagccactaggctactagac 43847057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 12927644 - 12927682
Alignment:
Q  5 atttaattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  12927644 atttaattgtgtgagttctagccactaggctattagacc 12927682  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25812198 - 25812156
Alignment:
Q  1 caacatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  25812198 caacatttaattgtgtgagctctaaccactaggctactagacc 25812156  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 38283207 - 38283247
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  38283207 acatttaattgtgtgaactctagccactaggctactagacc 38283247  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 34614069 - 34614103
Alignment:
Q  9 aattgtgtgagctctagcccctaggctattagacc 43  Q
    ||||||||||||||||||| |||||||||||||||    
T  34614069 aattgtgtgagctctagccactaggctattagacc 34614103  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 5908303 - 5908266
Alignment:
Q  5 atttaattgtgtgagctctagcccctaggctattagac 42  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  5908303 atttaattgtgtgagctctagccactaggctactagac 5908266  T

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Target: scaffold0246 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 24463 - 24503
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  24463 acatttaaatgtgtgagctctagccactaggctactagacc 24503  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 29646535 - 29646495
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||||||||||||||| |||| |||||||| ||||||    
T  29646535 acatttaattgtgtgagctccagccactaggctactagacc 29646495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32788841 - 32788801
Alignment:
Q  3 acatttaattgtgtgagctctagcccctaggctattagacc 43  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  32788841 acatttaattgtatgagctctagccactaggctactagacc 32788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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