View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_22 (Length: 488)
Name: NF3772_low_22
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 157 - 473
Target Start/End: Complemental strand, 1180262 - 1179946
Alignment:
| Q |
157 |
taacagtaacagtttcaatcttgttcatctttcttgtgcgtgaagaaatcttgaaaaaatgagttcgatttttcctcttatggtgcttcttcttcttgtt |
256 |
Q |
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| T |
1180262 |
taacagtaacagtttcaatcttgttcatctttcttgtgcgtgaagaaatcttgaaaaaatgagttcgatttttcctcttatggtgcttcttcttcttgtt |
1180163 |
T |
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| Q |
257 |
gctaacgccgtcacggtggtgaattcaatccccaacagagaattcgattcaatgctcaacactctccgatcacgcggttaccacctcttctgcaatgcaa |
356 |
Q |
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| T |
1180162 |
gctaacgccgtcacggtggtgaattcaatccccaacagagaattcgattcaatgctcaacactctccgatcacgcggttaccacctcttctgcaatgcaa |
1180063 |
T |
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| Q |
357 |
tcctcacctctgatcttcgaatcgatcttcttgatccaaattcaaacgccacaaactctttcactttcttcgctcccactgattcttcactcttcgctct |
456 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1180062 |
tcctcacctccgatcttcgaatcgatcttcttgatccaaattcaaacgccacaaactctttcactttcttcgctcccactgattcttcactcttcgctct |
1179963 |
T |
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| Q |
457 |
cgacatgacgcaaactg |
473 |
Q |
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| T |
1179962 |
cgacatgacgcaaactg |
1179946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 1180407 - 1180322
Alignment:
| Q |
12 |
acagaagcccgtgaagatagaagtaacccaaaaaggaaagcccaagcccaacaataagaaaggttgaaatttccaataaatataac |
97 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1180407 |
acagaagcccatgaagatagaagtaacccaaaaaggaaagcccaagcccaacaataagaaaggttgaaatttccaataaatataac |
1180322 |
T |
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