View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_222 (Length: 222)
Name: NF3772_low_222
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_222 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 7349578 - 7349682
Alignment:
| Q |
111 |
aataaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctacctt |
210 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7349578 |
aataaaaggaaggtatgcaactgcattcaaaatctaattaacattttcatacatttttgagtaatattcaaattgtcaacgatgaagaggaagctacctt |
7349677 |
T |
|
| Q |
211 |
tgtta |
215 |
Q |
| |
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||||| |
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| T |
7349678 |
tgtta |
7349682 |
T |
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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 24259034 - 24259137
Alignment:
| Q |
112 |
ataaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctaccttt |
211 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||| |||||||||| ||||||||||||| |||||| |||||||||| |
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| T |
24259034 |
ataaaaggaaggtatgcaactgcattcaaaatctcattcacattttcatacattttttagtaatattccaattgtcaacgatgaagaggtagctaccttt |
24259133 |
T |
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| Q |
212 |
gtta |
215 |
Q |
| |
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|||| |
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|
| T |
24259134 |
gtta |
24259137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 54934004 - 54933901
Alignment:
| Q |
112 |
ataaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctaccttt |
211 |
Q |
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|||||||||||||||| ||||||| ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |
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| T |
54934004 |
ataaaaggaaggtatgcaactgcaatcaaaatctcattcacattttcatacatttttgagtaatattccaattgtcaacgatgaagaggtagctaccttt |
54933905 |
T |
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| Q |
212 |
gtta |
215 |
Q |
| |
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|||| |
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|
| T |
54933904 |
gtta |
54933901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 22068872 - 22068946
Alignment:
| Q |
15 |
atcatactacgattaatgtgaagttgaaattttttattttgctatggaaaagatagagtgtacacaaaaaaggag |
89 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22068872 |
atcatacttcgattaatgtgaagttgaaattttttattttgctatggaaaagatagagtgtacacaaaaaaggag |
22068946 |
T |
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